Hb_001950_110

Information

Type transcription factor
Description TF Family: MYB
Location Contig1950: 119893-120990
Sequence    

Annotation

kegg
ID rcu:RCOM_1153840
description r2r3-myb transcription factor, putative
nr
ID XP_012079312.1
description PREDICTED: transcription factor MYB44 [Jatropha curcas]
swissprot
ID Q9FDW1
description Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1
trembl
ID A0A067K7A3
description MYB family protein OS=Jatropha curcas GN=JCGZ_12458 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor myb44-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19465: 119785-121684
cDNA
(Sanger)
(ID:Location)		 034_G12.ab1: 119785-120584 , 050_A02.ab1: 119785-120288

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001950_110 0.0 transcription factor TF Family: MYB PREDICTED: transcription factor MYB44 [Jatropha curcas]
2 Hb_002447_150 0.1562197486 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
3 Hb_001404_090 0.1638124364 - - PREDICTED: kinesin-like protein NACK2 [Camelina sativa]
4 Hb_001103_060 0.1694594897 - - proton-dependent oligopeptide transport family protein [Populus trichocarpa]
5 Hb_004965_080 0.1695672475 - - hypothetical protein F383_09654 [Gossypium arboreum]
6 Hb_028487_130 0.1705845162 - - kinase family protein [Populus trichocarpa]
7 Hb_000665_260 0.1724568621 - - PREDICTED: uncharacterized protein LOC105637620 isoform X1 [Jatropha curcas]
8 Hb_000418_050 0.1727103858 - - PREDICTED: uncharacterized protein LOC105636892 [Jatropha curcas]
9 Hb_002804_010 0.1727283397 - - PREDICTED: U-box domain-containing protein 33-like [Jatropha curcas]
10 Hb_002849_070 0.1733811076 - - PREDICTED: protein BPS1, chloroplastic [Jatropha curcas]
11 Hb_000617_190 0.1743950142 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase [Jatropha curcas]
12 Hb_002411_160 0.1761614206 - - PREDICTED: uncharacterized protein LOC105631262 isoform X1 [Jatropha curcas]
13 Hb_001951_240 0.1771092899 - - PREDICTED: protein MEI2-like 5 [Jatropha curcas]
14 Hb_000676_040 0.179267916 - - hypothetical protein POPTR_0007s13320g [Populus trichocarpa]
15 Hb_002349_030 0.1794587182 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000950_040 0.1796822914 - - cation-transporting atpase plant, putative [Ricinus communis]
17 Hb_000227_320 0.179711283 - - unnamed protein product [Vitis vinifera]
18 Hb_033363_010 0.1800829726 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
19 Hb_001776_010 0.1813400682 - - PREDICTED: probable receptor-like protein kinase At5g47070 [Jatropha curcas]
20 Hb_001205_180 0.1818071328 - - hypothetical protein POPTR_0005s12580g [Populus trichocarpa]

Gene co-expression network

sample Hb_001950_110 Hb_001950_110 Hb_002447_150 Hb_002447_150 Hb_001950_110--Hb_002447_150 Hb_001404_090 Hb_001404_090 Hb_001950_110--Hb_001404_090 Hb_001103_060 Hb_001103_060 Hb_001950_110--Hb_001103_060 Hb_004965_080 Hb_004965_080 Hb_001950_110--Hb_004965_080 Hb_028487_130 Hb_028487_130 Hb_001950_110--Hb_028487_130 Hb_000665_260 Hb_000665_260 Hb_001950_110--Hb_000665_260 Hb_000059_130 Hb_000059_130 Hb_002447_150--Hb_000059_130 Hb_000216_020 Hb_000216_020 Hb_002447_150--Hb_000216_020 Hb_001369_160 Hb_001369_160 Hb_002447_150--Hb_001369_160 Hb_003894_100 Hb_003894_100 Hb_002447_150--Hb_003894_100 Hb_008667_060 Hb_008667_060 Hb_002447_150--Hb_008667_060 Hb_115513_040 Hb_115513_040 Hb_002447_150--Hb_115513_040 Hb_000416_060 Hb_000416_060 Hb_001404_090--Hb_000416_060 Hb_000094_150 Hb_000094_150 Hb_001404_090--Hb_000094_150 Hb_132840_030 Hb_132840_030 Hb_001404_090--Hb_132840_030 Hb_005588_120 Hb_005588_120 Hb_001404_090--Hb_005588_120 Hb_001307_200 Hb_001307_200 Hb_001404_090--Hb_001307_200 Hb_073973_020 Hb_073973_020 Hb_001404_090--Hb_073973_020 Hb_001103_060--Hb_000094_150 Hb_002383_050 Hb_002383_050 Hb_001103_060--Hb_002383_050 Hb_001059_060 Hb_001059_060 Hb_001103_060--Hb_001059_060 Hb_004577_010 Hb_004577_010 Hb_001103_060--Hb_004577_010 Hb_004162_220 Hb_004162_220 Hb_001103_060--Hb_004162_220 Hb_002010_090 Hb_002010_090 Hb_001103_060--Hb_002010_090 Hb_056196_060 Hb_056196_060 Hb_004965_080--Hb_056196_060 Hb_143766_030 Hb_143766_030 Hb_004965_080--Hb_143766_030 Hb_002387_040 Hb_002387_040 Hb_004965_080--Hb_002387_040 Hb_000815_310 Hb_000815_310 Hb_004965_080--Hb_000815_310 Hb_002965_050 Hb_002965_050 Hb_004965_080--Hb_002965_050 Hb_010068_070 Hb_010068_070 Hb_004965_080--Hb_010068_070 Hb_001135_030 Hb_001135_030 Hb_028487_130--Hb_001135_030 Hb_018691_020 Hb_018691_020 Hb_028487_130--Hb_018691_020 Hb_000203_270 Hb_000203_270 Hb_028487_130--Hb_000203_270 Hb_002849_070 Hb_002849_070 Hb_028487_130--Hb_002849_070 Hb_003849_220 Hb_003849_220 Hb_028487_130--Hb_003849_220 Hb_010315_100 Hb_010315_100 Hb_028487_130--Hb_010315_100 Hb_003964_110 Hb_003964_110 Hb_000665_260--Hb_003964_110 Hb_000227_320 Hb_000227_320 Hb_000665_260--Hb_000227_320 Hb_008165_020 Hb_008165_020 Hb_000665_260--Hb_008165_020 Hb_143629_020 Hb_143629_020 Hb_000665_260--Hb_143629_020 Hb_013358_060 Hb_013358_060 Hb_000665_260--Hb_013358_060 Hb_000331_100 Hb_000331_100 Hb_000665_260--Hb_000331_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.02669 87.6139 56.133 53.6246 13.98 6.55168
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.802 7.14033 2.76215 42.6101 31.3006

CAGE analysis