Hb_001951_030

Information

Type -
Description -
Location Contig1951: 22416-25150
Sequence    

Annotation

kegg
ID rcu:RCOM_0633850
description hypothetical protein
nr
ID KDP37941.1
description hypothetical protein JCGZ_04584 [Jatropha curcas]
swissprot
ID P52409
description Glucan endo-1,3-beta-glucosidase OS=Triticum aestivum GN=GLC1 PE=2 SV=1
trembl
ID A0A067KNY2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04584 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19467: 24704-24981
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001951_030 0.0 - - hypothetical protein JCGZ_04584 [Jatropha curcas]
2 Hb_005157_010 0.1695143605 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
3 Hb_007416_150 0.1725564142 - - sarcosine oxidase, putative [Ricinus communis]
4 Hb_000670_110 0.1771479462 - - l-asparaginase, putative [Ricinus communis]
5 Hb_011618_040 0.1798980817 - - conserved hypothetical protein [Ricinus communis]
6 Hb_089920_010 0.1853695689 - - PREDICTED: LOW QUALITY PROTEIN: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
7 Hb_008225_100 0.1922995248 - - -
8 Hb_004195_190 0.1947941569 - - WD-repeat protein, putative [Ricinus communis]
9 Hb_001248_030 0.1984271304 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_011970_040 0.2007963432 - - conserved hypothetical protein [Ricinus communis]
11 Hb_008020_010 0.204199871 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like [Jatropha curcas]
12 Hb_004195_110 0.2054070472 - - hypothetical protein JCGZ_24010 [Jatropha curcas]
13 Hb_005841_080 0.2075787841 - - hypothetical protein POPTR_0018s11370g [Populus trichocarpa]
14 Hb_002917_030 0.2095952381 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase HSL2 [Setaria italica]
15 Hb_003299_010 0.2120532788 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
16 Hb_003052_200 0.2125695088 - - hypothetical protein POPTR_0010s14360g [Populus trichocarpa]
17 Hb_007481_020 0.2139551438 - - -
18 Hb_133636_010 0.2169190554 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Brassica rapa]
19 Hb_000097_040 0.217177902 transcription factor TF Family: MYB myb domain protein [Hevea brasiliensis]
20 Hb_000106_070 0.217507494 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]

Gene co-expression network

sample Hb_001951_030 Hb_001951_030 Hb_005157_010 Hb_005157_010 Hb_001951_030--Hb_005157_010 Hb_007416_150 Hb_007416_150 Hb_001951_030--Hb_007416_150 Hb_000670_110 Hb_000670_110 Hb_001951_030--Hb_000670_110 Hb_011618_040 Hb_011618_040 Hb_001951_030--Hb_011618_040 Hb_089920_010 Hb_089920_010 Hb_001951_030--Hb_089920_010 Hb_008225_100 Hb_008225_100 Hb_001951_030--Hb_008225_100 Hb_003299_010 Hb_003299_010 Hb_005157_010--Hb_003299_010 Hb_005841_080 Hb_005841_080 Hb_005157_010--Hb_005841_080 Hb_000685_060 Hb_000685_060 Hb_005157_010--Hb_000685_060 Hb_003504_040 Hb_003504_040 Hb_005157_010--Hb_003504_040 Hb_133636_010 Hb_133636_010 Hb_005157_010--Hb_133636_010 Hb_001248_030 Hb_001248_030 Hb_007416_150--Hb_001248_030 Hb_002304_140 Hb_002304_140 Hb_007416_150--Hb_002304_140 Hb_011970_040 Hb_011970_040 Hb_007416_150--Hb_011970_040 Hb_009823_010 Hb_009823_010 Hb_007416_150--Hb_009823_010 Hb_004195_110 Hb_004195_110 Hb_007416_150--Hb_004195_110 Hb_003576_050 Hb_003576_050 Hb_007416_150--Hb_003576_050 Hb_000670_110--Hb_011970_040 Hb_000106_070 Hb_000106_070 Hb_000670_110--Hb_000106_070 Hb_003052_200 Hb_003052_200 Hb_000670_110--Hb_003052_200 Hb_000670_110--Hb_004195_110 Hb_000670_110--Hb_011618_040 Hb_000670_110--Hb_001248_030 Hb_000556_110 Hb_000556_110 Hb_011618_040--Hb_000556_110 Hb_011618_040--Hb_000106_070 Hb_001454_340 Hb_001454_340 Hb_011618_040--Hb_001454_340 Hb_003119_070 Hb_003119_070 Hb_011618_040--Hb_003119_070 Hb_011618_040--Hb_007416_150 Hb_003371_120 Hb_003371_120 Hb_089920_010--Hb_003371_120 Hb_000997_110 Hb_000997_110 Hb_089920_010--Hb_000997_110 Hb_002273_080 Hb_002273_080 Hb_089920_010--Hb_002273_080 Hb_089920_010--Hb_005157_010 Hb_000215_410 Hb_000215_410 Hb_089920_010--Hb_000215_410 Hb_008020_010 Hb_008020_010 Hb_008225_100--Hb_008020_010 Hb_002917_030 Hb_002917_030 Hb_008225_100--Hb_002917_030 Hb_005000_220 Hb_005000_220 Hb_008225_100--Hb_005000_220 Hb_001951_090 Hb_001951_090 Hb_008225_100--Hb_001951_090 Hb_006106_020 Hb_006106_020 Hb_008225_100--Hb_006106_020 Hb_002553_080 Hb_002553_080 Hb_008225_100--Hb_002553_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.50144 5.1376 0.453759 0.118084 0.37326 0.174121
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.137938 0.1899 0.203171 4.85726 0.11308

CAGE analysis