Hb_001951_050

Information

Type -
Description -
Location Contig1951: 28882-29679
Sequence    

Annotation

kegg
ID rcu:RCOM_0633890
description chlorophyll A/B binding protein, putative
nr
ID XP_002519724.1
description chlorophyll A/B binding protein, putative [Ricinus communis]
swissprot
ID P27493
description Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1
trembl
ID B9S155
description Chlorophyll A/B binding protein, putative OS=Ricinus communis GN=RCOM_0633890 PE=4 SV=1
Gene Ontology
ID GO:0016020
description chlorophyll a-b binding protein of lhcii type 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19468: 28827-29900
cDNA
(Sanger)
(ID:Location)		 049_F01.ab1: 28827-29596

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001951_050 0.0 - - chlorophyll A/B binding protein, putative [Ricinus communis]
2 Hb_001140_110 0.0326592612 - - hypothetical protein JCGZ_26123 [Jatropha curcas]
3 Hb_001080_290 0.0390930232 - - PSI reaction center subunit II [Citrus sinensis]
4 Hb_001097_110 0.0434659686 - - gibberellin 20-oxidase, putative [Ricinus communis]
5 Hb_004143_080 0.0514962497 - - PREDICTED: protein ECERIFERUM 1 [Jatropha curcas]
6 Hb_000815_120 0.0548087561 - - calcium ion binding protein, putative [Ricinus communis]
7 Hb_042123_010 0.0574340651 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Populus euphratica]
8 Hb_004818_010 0.0586474738 - - hypothetical protein JCGZ_13628 [Jatropha curcas]
9 Hb_077976_010 0.0587850123 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
10 Hb_003805_110 0.0608861659 - - PREDICTED: laccase-11-like [Jatropha curcas]
11 Hb_003093_050 0.0621162561 - - PREDICTED: uncharacterized protein LOC105641023 isoform X2 [Jatropha curcas]
12 Hb_003058_150 0.0648366213 - - PREDICTED: gibberellin 3-beta-dioxygenase 1-like [Jatropha curcas]
13 Hb_007534_080 0.0684004797 - - d-3-phosphoglycerate dehydrogenase, putative [Ricinus communis]
14 Hb_029584_020 0.0700998185 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000530_060 0.0711249128 - - -
16 Hb_000629_110 0.071676099 - - PREDICTED: protein RTF2 homolog [Jatropha curcas]
17 Hb_000608_160 0.0721705503 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
18 Hb_000140_040 0.0752564281 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
19 Hb_005474_070 0.076298354 - - hypothetical protein JCGZ_10579 [Jatropha curcas]
20 Hb_000504_220 0.0763695755 - - hypothetical protein JCGZ_10249 [Jatropha curcas]

Gene co-expression network

sample Hb_001951_050 Hb_001951_050 Hb_001140_110 Hb_001140_110 Hb_001951_050--Hb_001140_110 Hb_001080_290 Hb_001080_290 Hb_001951_050--Hb_001080_290 Hb_001097_110 Hb_001097_110 Hb_001951_050--Hb_001097_110 Hb_004143_080 Hb_004143_080 Hb_001951_050--Hb_004143_080 Hb_000815_120 Hb_000815_120 Hb_001951_050--Hb_000815_120 Hb_042123_010 Hb_042123_010 Hb_001951_050--Hb_042123_010 Hb_003058_150 Hb_003058_150 Hb_001140_110--Hb_003058_150 Hb_001140_110--Hb_001097_110 Hb_003805_110 Hb_003805_110 Hb_001140_110--Hb_003805_110 Hb_001140_110--Hb_001080_290 Hb_000940_120 Hb_000940_120 Hb_001140_110--Hb_000940_120 Hb_077976_010 Hb_077976_010 Hb_001080_290--Hb_077976_010 Hb_001775_010 Hb_001775_010 Hb_001080_290--Hb_001775_010 Hb_001080_290--Hb_042123_010 Hb_001080_290--Hb_001097_110 Hb_000140_040 Hb_000140_040 Hb_001097_110--Hb_000140_040 Hb_001097_110--Hb_003805_110 Hb_007534_080 Hb_007534_080 Hb_001097_110--Hb_007534_080 Hb_001097_110--Hb_003058_150 Hb_004143_080--Hb_000815_120 Hb_004818_010 Hb_004818_010 Hb_004143_080--Hb_004818_010 Hb_003093_050 Hb_003093_050 Hb_004143_080--Hb_003093_050 Hb_002301_070 Hb_002301_070 Hb_004143_080--Hb_002301_070 Hb_000704_020 Hb_000704_020 Hb_004143_080--Hb_000704_020 Hb_000815_120--Hb_004818_010 Hb_000815_120--Hb_000704_020 Hb_000815_120--Hb_002301_070 Hb_000815_120--Hb_003093_050 Hb_042123_010--Hb_077976_010 Hb_042123_010--Hb_001097_110 Hb_042123_010--Hb_001140_110 Hb_042123_010--Hb_003058_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0369778 84.9435 1242.03 1987.23 0.0276021 1.07064
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.89591 2.28935 0.0962848 4.84913 10371.8

CAGE analysis