Hb_001951_090

Information

Type transcription factor
Description TF Family: WRKY
Location Contig1951: 81010-82886
Sequence    

Annotation

kegg
ID rcu:RCOM_0634190
description WRKY transcription factor, putative
nr
ID XP_002519733.1
description WRKY transcription factor, putative [Ricinus communis]
swissprot
ID Q8VWJ2
description Probable WRKY transcription factor 28 OS=Arabidopsis thaliana GN=WRKY28 PE=2 SV=1
trembl
ID B9S164
description WRKY transcription factor, putative OS=Ricinus communis GN=RCOM_0634190 PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 71

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19480: 82670-82850
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001951_090 0.0 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
2 Hb_001952_110 0.1087373054 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
3 Hb_002917_020 0.1154660009 - - predicted protein [Arabidopsis lyrata subsp. lyrata]
4 Hb_008020_010 0.1205723717 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like [Jatropha curcas]
5 Hb_000917_150 0.1251139559 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002917_030 0.130133099 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase HSL2 [Setaria italica]
7 Hb_012019_020 0.1312946116 - - Nonspecific lipid-transfer protein precursor, putative [Ricinus communis]
8 Hb_000597_110 0.1382630922 - - PREDICTED: VQ motif-containing protein 22-like [Jatropha curcas]
9 Hb_001596_040 0.1447193472 - - PREDICTED: caffeic acid 3-O-methyltransferase 1-like [Populus euphratica]
10 Hb_006501_120 0.1457763385 - - hypothetical protein JCGZ_07378 [Jatropha curcas]
11 Hb_005000_220 0.1473375388 - - gulonolactone oxidase, putative [Ricinus communis]
12 Hb_004931_060 0.1517217373 transcription factor TF Family: MYB-related PREDICTED: myb-related protein Myb4 [Nelumbo nucifera]
13 Hb_186298_010 0.1539041008 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_017987_040 0.1579470888 transcription factor TF Family: MYB hypothetical protein POPTR_0002s11440g [Populus trichocarpa]
15 Hb_005550_070 0.1610331903 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 75 [Populus euphratica]
16 Hb_000300_570 0.1613431045 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
17 Hb_003677_010 0.1669940459 transcription factor TF Family: SRS PREDICTED: protein SHI RELATED SEQUENCE 1 [Jatropha curcas]
18 Hb_008225_100 0.1677526998 - - -
19 Hb_000265_010 0.168100081 - - amino acid transporter, putative [Ricinus communis]
20 Hb_032631_010 0.1686393696 - - PREDICTED: uncharacterized protein LOC105638774 [Jatropha curcas]

Gene co-expression network

sample Hb_001951_090 Hb_001951_090 Hb_001952_110 Hb_001952_110 Hb_001951_090--Hb_001952_110 Hb_002917_020 Hb_002917_020 Hb_001951_090--Hb_002917_020 Hb_008020_010 Hb_008020_010 Hb_001951_090--Hb_008020_010 Hb_000917_150 Hb_000917_150 Hb_001951_090--Hb_000917_150 Hb_002917_030 Hb_002917_030 Hb_001951_090--Hb_002917_030 Hb_012019_020 Hb_012019_020 Hb_001951_090--Hb_012019_020 Hb_001952_110--Hb_012019_020 Hb_001596_040 Hb_001596_040 Hb_001952_110--Hb_001596_040 Hb_000101_050 Hb_000101_050 Hb_001952_110--Hb_000101_050 Hb_001952_110--Hb_008020_010 Hb_005550_070 Hb_005550_070 Hb_001952_110--Hb_005550_070 Hb_004931_060 Hb_004931_060 Hb_002917_020--Hb_004931_060 Hb_186298_010 Hb_186298_010 Hb_002917_020--Hb_186298_010 Hb_002917_020--Hb_005550_070 Hb_011628_030 Hb_011628_030 Hb_002917_020--Hb_011628_030 Hb_047163_010 Hb_047163_010 Hb_002917_020--Hb_047163_010 Hb_008020_010--Hb_002917_030 Hb_008020_010--Hb_001596_040 Hb_008225_100 Hb_008225_100 Hb_008020_010--Hb_008225_100 Hb_008020_010--Hb_002917_020 Hb_000917_150--Hb_002917_020 Hb_059162_010 Hb_059162_010 Hb_000917_150--Hb_059162_010 Hb_000917_150--Hb_047163_010 Hb_005218_070 Hb_005218_070 Hb_000917_150--Hb_005218_070 Hb_000917_150--Hb_004931_060 Hb_001489_030 Hb_001489_030 Hb_002917_030--Hb_001489_030 Hb_002917_030--Hb_001596_040 Hb_002917_030--Hb_002917_020 Hb_000043_080 Hb_000043_080 Hb_002917_030--Hb_000043_080 Hb_012053_030 Hb_012053_030 Hb_002917_030--Hb_012053_030 Hb_001013_040 Hb_001013_040 Hb_012019_020--Hb_001013_040 Hb_012019_020--Hb_001596_040 Hb_012019_020--Hb_000101_050 Hb_007875_070 Hb_007875_070 Hb_012019_020--Hb_007875_070 Hb_006452_050 Hb_006452_050 Hb_012019_020--Hb_006452_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0460053 8.93444 1.10076 0.931745 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.290884 0.711955 0.0477166 14.7533 0.106254

CAGE analysis