Hb_001951_100

Information

Type -
Description -
Location Contig1951: 94496-99064
Sequence    

Annotation

kegg
ID rcu:RCOM_0634200
description Calcium-activated outward-rectifying potassium channel, putative
nr
ID XP_002519734.1
description Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]
swissprot
ID Q9SVV6
description Two-pore potassium channel 3 OS=Arabidopsis thaliana GN=TPK3 PE=2 SV=1
trembl
ID B9S165
description Calcium-activated outward-rectifying potassium channel, putative OS=Ricinus communis GN=RCOM_0634200 PE=4 SV=1
Gene Ontology
ID GO:0016020
description two-pore potassium channel 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19481: 94386-98610 , PASA_asmbl_19484: 99658-104966
cDNA
(Sanger)
(ID:Location)		 011_O19.ab1: 99812-104915 , 028_I15.ab1: 99828-104966

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001951_100 0.0 - - Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]
2 Hb_008686_020 0.0659756989 - - PREDICTED: uncharacterized protein LOC105632277 isoform X1 [Jatropha curcas]
3 Hb_000367_020 0.0682331175 - - PREDICTED: uncharacterized protein LOC105640608 [Jatropha curcas]
4 Hb_004696_070 0.0793402352 - - PREDICTED: BTB/POZ domain-containing protein At3g05675-like [Jatropha curcas]
5 Hb_012490_010 0.081706592 - - PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]
6 Hb_000445_130 0.0824001319 transcription factor TF Family: C3H hypothetical protein JCGZ_12159 [Jatropha curcas]
7 Hb_000340_360 0.0866105264 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RKF3 [Jatropha curcas]
8 Hb_000413_250 0.0867114374 - - Cysteine-rich RLK 29 [Theobroma cacao]
9 Hb_002918_320 0.0869653091 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105649589 isoform X1 [Jatropha curcas]
10 Hb_004551_020 0.0877795592 - - PREDICTED: polyadenylation and cleavage factor homolog 4 [Jatropha curcas]
11 Hb_000154_130 0.0888260848 - - PREDICTED: flowering time control protein FPA isoform X1 [Jatropha curcas]
12 Hb_007012_040 0.0919140728 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 44 [Jatropha curcas]
13 Hb_002248_120 0.0926381438 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
14 Hb_003605_220 0.0945265173 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
15 Hb_003124_270 0.0950478697 transcription factor TF Family: LUG hypothetical protein JCGZ_13223 [Jatropha curcas]
16 Hb_013405_180 0.0973592922 - - PREDICTED: uncharacterized protein LOC105648441 [Jatropha curcas]
17 Hb_001561_010 0.0983896362 - - PREDICTED: uncharacterized protein LOC105635045 isoform X1 [Jatropha curcas]
18 Hb_005649_080 0.0985542088 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
19 Hb_002928_190 0.0993290135 transcription factor TF Family: RWP-RK PREDICTED: protein NLP4 [Jatropha curcas]
20 Hb_000473_150 0.1052871115 - - PREDICTED: pullulanase 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001951_100 Hb_001951_100 Hb_008686_020 Hb_008686_020 Hb_001951_100--Hb_008686_020 Hb_000367_020 Hb_000367_020 Hb_001951_100--Hb_000367_020 Hb_004696_070 Hb_004696_070 Hb_001951_100--Hb_004696_070 Hb_012490_010 Hb_012490_010 Hb_001951_100--Hb_012490_010 Hb_000445_130 Hb_000445_130 Hb_001951_100--Hb_000445_130 Hb_000340_360 Hb_000340_360 Hb_001951_100--Hb_000340_360 Hb_002918_320 Hb_002918_320 Hb_008686_020--Hb_002918_320 Hb_008686_020--Hb_012490_010 Hb_002928_190 Hb_002928_190 Hb_008686_020--Hb_002928_190 Hb_004551_020 Hb_004551_020 Hb_008686_020--Hb_004551_020 Hb_008686_020--Hb_000367_020 Hb_021596_010 Hb_021596_010 Hb_000367_020--Hb_021596_010 Hb_005649_080 Hb_005649_080 Hb_000367_020--Hb_005649_080 Hb_000154_130 Hb_000154_130 Hb_000367_020--Hb_000154_130 Hb_001054_120 Hb_001054_120 Hb_000367_020--Hb_001054_120 Hb_004696_070--Hb_012490_010 Hb_004696_070--Hb_008686_020 Hb_002686_140 Hb_002686_140 Hb_004696_070--Hb_002686_140 Hb_020805_150 Hb_020805_150 Hb_004696_070--Hb_020805_150 Hb_000331_100 Hb_000331_100 Hb_004696_070--Hb_000331_100 Hb_012490_010--Hb_002928_190 Hb_012490_010--Hb_004551_020 Hb_012490_010--Hb_020805_150 Hb_000170_100 Hb_000170_100 Hb_012490_010--Hb_000170_100 Hb_000445_130--Hb_000154_130 Hb_007012_040 Hb_007012_040 Hb_000445_130--Hb_007012_040 Hb_015183_080 Hb_015183_080 Hb_000445_130--Hb_015183_080 Hb_003124_270 Hb_003124_270 Hb_000445_130--Hb_003124_270 Hb_000445_130--Hb_000367_020 Hb_014006_010 Hb_014006_010 Hb_000340_360--Hb_014006_010 Hb_000369_080 Hb_000369_080 Hb_000340_360--Hb_000369_080 Hb_013405_180 Hb_013405_180 Hb_000340_360--Hb_013405_180 Hb_013399_090 Hb_013399_090 Hb_000340_360--Hb_013399_090 Hb_005183_140 Hb_005183_140 Hb_000340_360--Hb_005183_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.95297 18.508 6.29762 8.95699 2.65731 4.23971
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.04918 2.43766 3.95962 6.90037 13.2361

CAGE analysis