Hb_001951_110

Information

Type -
Description -
Location Contig1951: 99664-104952
Sequence    

Annotation

kegg
ID vvi:100245316
description DNA-binding protein DDB_G0278111
nr
ID XP_012072051.1
description PREDICTED: DNA-binding protein DDB_G0278111 [Jatropha curcas]
swissprot
ID Q5RBT0
description Programmed cell death protein 5 OS=Pongo abelii GN=PDCD5 PE=2 SV=3
trembl
ID W9RM62
description Programmed cell death protein 5 OS=Morus notabilis GN=L484_010634 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna-binding protein ddb_g0278111

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19484: 99658-104966
cDNA
(Sanger)
(ID:Location)		 011_O19.ab1: 99812-104915 , 028_I15.ab1: 99828-104966

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001951_110 0.0 - - PREDICTED: DNA-binding protein DDB_G0278111 [Jatropha curcas]
2 Hb_001804_040 0.0546668942 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000866_300 0.0600962166 - - hypothetical protein CICLE_v10023145mg [Citrus clementina]
4 Hb_000417_110 0.0655446258 - - PREDICTED: uncharacterized protein LOC105649681 [Jatropha curcas]
5 Hb_004204_030 0.0660086856 - - unknown [Populus trichocarpa]
6 Hb_000392_270 0.0711222192 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
7 Hb_002529_100 0.0763405515 - - PREDICTED: DET1- and DDB1-associated protein 1 isoform X1 [Jatropha curcas]
8 Hb_003878_190 0.0809341288 - - hypothetical protein POPTR_0011s11040g [Populus trichocarpa]
9 Hb_003001_060 0.0831880284 - - wound-responsive family protein [Populus trichocarpa]
10 Hb_024835_030 0.0838187101 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
11 Hb_004012_010 0.0847714194 - - PREDICTED: 40S ribosomal protein S15a-1-like [Gossypium raimondii]
12 Hb_000056_340 0.0868660891 - - 60S ribosomal protein L34A [Hevea brasiliensis]
13 Hb_001019_090 0.0869891942 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
14 Hb_000977_080 0.0871740621 - - type II inositol 5-phosphatase, putative [Ricinus communis]
15 Hb_001754_150 0.0874036623 - - PREDICTED: vesicle-associated membrane protein 724 [Jatropha curcas]
16 Hb_001454_330 0.0876617169 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
17 Hb_022250_040 0.0880631451 - - PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Jatropha curcas]
18 Hb_157854_010 0.0889289105 - - PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
19 Hb_000163_200 0.0891824025 - - PREDICTED: uncharacterized protein LOC105642527 [Jatropha curcas]
20 Hb_009711_030 0.0923038819 - - PREDICTED: uncharacterized protein LOC105647792 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001951_110 Hb_001951_110 Hb_001804_040 Hb_001804_040 Hb_001951_110--Hb_001804_040 Hb_000866_300 Hb_000866_300 Hb_001951_110--Hb_000866_300 Hb_000417_110 Hb_000417_110 Hb_001951_110--Hb_000417_110 Hb_004204_030 Hb_004204_030 Hb_001951_110--Hb_004204_030 Hb_000392_270 Hb_000392_270 Hb_001951_110--Hb_000392_270 Hb_002529_100 Hb_002529_100 Hb_001951_110--Hb_002529_100 Hb_001804_040--Hb_004204_030 Hb_001804_040--Hb_000866_300 Hb_001754_150 Hb_001754_150 Hb_001804_040--Hb_001754_150 Hb_001019_090 Hb_001019_090 Hb_001804_040--Hb_001019_090 Hb_001366_230 Hb_001366_230 Hb_001804_040--Hb_001366_230 Hb_000866_300--Hb_004204_030 Hb_000977_080 Hb_000977_080 Hb_000866_300--Hb_000977_080 Hb_000866_300--Hb_000392_270 Hb_000260_050 Hb_000260_050 Hb_000866_300--Hb_000260_050 Hb_000634_050 Hb_000634_050 Hb_000417_110--Hb_000634_050 Hb_001584_070 Hb_001584_070 Hb_000417_110--Hb_001584_070 Hb_000798_030 Hb_000798_030 Hb_000417_110--Hb_000798_030 Hb_003058_070 Hb_003058_070 Hb_000417_110--Hb_003058_070 Hb_003001_060 Hb_003001_060 Hb_000417_110--Hb_003001_060 Hb_006569_020 Hb_006569_020 Hb_004204_030--Hb_006569_020 Hb_004204_030--Hb_000392_270 Hb_001514_020 Hb_001514_020 Hb_004204_030--Hb_001514_020 Hb_000392_270--Hb_000977_080 Hb_001369_650 Hb_001369_650 Hb_000392_270--Hb_001369_650 Hb_003540_040 Hb_003540_040 Hb_000392_270--Hb_003540_040 Hb_003551_020 Hb_003551_020 Hb_000392_270--Hb_003551_020 Hb_003878_190 Hb_003878_190 Hb_000392_270--Hb_003878_190 Hb_011360_140 Hb_011360_140 Hb_000392_270--Hb_011360_140 Hb_001257_080 Hb_001257_080 Hb_002529_100--Hb_001257_080 Hb_002529_100--Hb_000798_030 Hb_000023_230 Hb_000023_230 Hb_002529_100--Hb_000023_230 Hb_000045_190 Hb_000045_190 Hb_002529_100--Hb_000045_190 Hb_000056_340 Hb_000056_340 Hb_002529_100--Hb_000056_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
512.492 119.128 78.5103 79.5955 482.247 391.609
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
635.927 734.757 333.293 139.082 43.5603

CAGE analysis