Hb_001951_140

Information

Type -
Description -
Location Contig1951: 114342-119293
Sequence    

Annotation

kegg
ID pop:POPTR_0001s34480g
description hypothetical protein
nr
ID XP_012091911.1
description PREDICTED: uncharacterized protein LOC105649757 isoform X1 [Jatropha curcas]
swissprot
ID Q60BH8
description Putative pterin-4-alpha-carbinolamine dehydratase OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) GN=MCA0497 PE=3 SV=1
trembl
ID A0A067JEP7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21679 PE=4 SV=1
Gene Ontology
ID GO:0008124
description pterin-4-alpha-carbinolamine dehydratase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19487: 114275-119257
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001951_140 0.0 - - PREDICTED: uncharacterized protein LOC105649757 isoform X1 [Jatropha curcas]
2 Hb_001246_060 0.0613915157 - - ATP binding protein, putative [Ricinus communis]
3 Hb_002685_190 0.0858508512 transcription factor TF Family: SET PREDICTED: probable zinc metalloprotease EGY1, chloroplastic [Jatropha curcas]
4 Hb_000154_080 0.0962879335 transcription factor TF Family: bZIP PREDICTED: probable transcription factor PosF21 [Jatropha curcas]
5 Hb_002686_020 0.0987619385 - - galactose-1-phosphate uridylyltransferase, putative [Ricinus communis]
6 Hb_004645_050 0.0991505497 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 [Jatropha curcas]
7 Hb_000714_030 0.1026647885 - - Nucleosome assembly [Gossypium arboreum]
8 Hb_000015_080 0.1027350064 - - PREDICTED: uncharacterized protein LOC105647918 isoform X1 [Jatropha curcas]
9 Hb_118707_030 0.1029590658 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Beta vulgaris subsp. vulgaris]
10 Hb_000684_090 0.1045342791 transcription factor TF Family: S1Fa-like -
11 Hb_002928_130 0.1045768716 - - PREDICTED: small nuclear ribonucleoprotein Sm D3 [Jatropha curcas]
12 Hb_001540_010 0.1049593501 - - PREDICTED: uncharacterized protein LOC105639920 [Jatropha curcas]
13 Hb_143629_230 0.1057233096 - - ring finger, putative [Ricinus communis]
14 Hb_003185_080 0.1058438211 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
15 Hb_012338_010 0.1058708355 - - conserved hypothetical protein [Ricinus communis]
16 Hb_028347_010 0.1058748375 - - -
17 Hb_003540_040 0.1063941927 - - hypothetical protein JCGZ_20979 [Jatropha curcas]
18 Hb_004204_120 0.1070603268 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
19 Hb_002963_020 0.1072143628 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001278_110 0.1075330188 - - PREDICTED: uncharacterized protein LOC104613296 isoform X3 [Nelumbo nucifera]

Gene co-expression network

sample Hb_001951_140 Hb_001951_140 Hb_001246_060 Hb_001246_060 Hb_001951_140--Hb_001246_060 Hb_002685_190 Hb_002685_190 Hb_001951_140--Hb_002685_190 Hb_000154_080 Hb_000154_080 Hb_001951_140--Hb_000154_080 Hb_002686_020 Hb_002686_020 Hb_001951_140--Hb_002686_020 Hb_004645_050 Hb_004645_050 Hb_001951_140--Hb_004645_050 Hb_000714_030 Hb_000714_030 Hb_001951_140--Hb_000714_030 Hb_001117_090 Hb_001117_090 Hb_001246_060--Hb_001117_090 Hb_001246_060--Hb_002686_020 Hb_002205_070 Hb_002205_070 Hb_001246_060--Hb_002205_070 Hb_001540_010 Hb_001540_010 Hb_001246_060--Hb_001540_010 Hb_026549_040 Hb_026549_040 Hb_001246_060--Hb_026549_040 Hb_003599_040 Hb_003599_040 Hb_002685_190--Hb_003599_040 Hb_004204_120 Hb_004204_120 Hb_002685_190--Hb_004204_120 Hb_002963_010 Hb_002963_010 Hb_002685_190--Hb_002963_010 Hb_000465_060 Hb_000465_060 Hb_002685_190--Hb_000465_060 Hb_009954_040 Hb_009954_040 Hb_002685_190--Hb_009954_040 Hb_001278_110 Hb_001278_110 Hb_002685_190--Hb_001278_110 Hb_003878_190 Hb_003878_190 Hb_000154_080--Hb_003878_190 Hb_003551_020 Hb_003551_020 Hb_000154_080--Hb_003551_020 Hb_000154_080--Hb_002685_190 Hb_015978_060 Hb_015978_060 Hb_000154_080--Hb_015978_060 Hb_000007_100 Hb_000007_100 Hb_000154_080--Hb_000007_100 Hb_001221_410 Hb_001221_410 Hb_000154_080--Hb_001221_410 Hb_003050_080 Hb_003050_080 Hb_002686_020--Hb_003050_080 Hb_008878_030 Hb_008878_030 Hb_002686_020--Hb_008878_030 Hb_002686_020--Hb_001540_010 Hb_000331_080 Hb_000331_080 Hb_002686_020--Hb_000331_080 Hb_001821_010 Hb_001821_010 Hb_002686_020--Hb_001821_010 Hb_007416_030 Hb_007416_030 Hb_002686_020--Hb_007416_030 Hb_000977_080 Hb_000977_080 Hb_004645_050--Hb_000977_080 Hb_001235_210 Hb_001235_210 Hb_004645_050--Hb_001235_210 Hb_000189_270 Hb_000189_270 Hb_004645_050--Hb_000189_270 Hb_002311_350 Hb_002311_350 Hb_004645_050--Hb_002311_350 Hb_000531_020 Hb_000531_020 Hb_004645_050--Hb_000531_020 Hb_002307_030 Hb_002307_030 Hb_004645_050--Hb_002307_030 Hb_000742_140 Hb_000742_140 Hb_000714_030--Hb_000742_140 Hb_000457_110 Hb_000457_110 Hb_000714_030--Hb_000457_110 Hb_009767_120 Hb_009767_120 Hb_000714_030--Hb_009767_120 Hb_000933_180 Hb_000933_180 Hb_000714_030--Hb_000933_180 Hb_000098_190 Hb_000098_190 Hb_000714_030--Hb_000098_190 Hb_000465_040 Hb_000465_040 Hb_000714_030--Hb_000465_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.7459 11.1015 10.3859 8.1198 33.7962 28.9888
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.7871 55.5281 21.6551 8.84652 17.724

CAGE analysis