Hb_001951_150

Information

Type -
Description -
Location Contig1951: 127008-129721
Sequence    

Annotation

kegg
ID pop:POPTR_0001s34490g
description hypothetical protein
nr
ID XP_012091913.1
description PREDICTED: uncharacterized protein LOC105649758 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JBS6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21678 PE=4 SV=1
Gene Ontology
ID GO:0008168
description PREDICTED: uncharacterized protein LOC105649758

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19489: 127047-129229 , PASA_asmbl_19490: 127060-129210
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001951_150 0.0 - - PREDICTED: uncharacterized protein LOC105649758 [Jatropha curcas]
2 Hb_011214_090 0.1033026891 - - PREDICTED: aspartate carbamoyltransferase 1, chloroplastic [Jatropha curcas]
3 Hb_000016_210 0.1056678801 - - PREDICTED: post-GPI attachment to proteins factor 3 [Jatropha curcas]
4 Hb_001946_050 0.1068778352 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005463_110 0.1086387622 - - PREDICTED: glyoxylate/hydroxypyruvate reductase HPR3-like [Jatropha curcas]
6 Hb_001314_080 0.1091839213 - - hypothetical protein POPTR_0018s14330g [Populus trichocarpa]
7 Hb_001999_210 0.1105395996 - - PREDICTED: sodium-dependent phosphate transport protein 1, chloroplastic [Eucalyptus grandis]
8 Hb_008406_180 0.1123280646 - - RING/U-box superfamily protein isoform 2 [Theobroma cacao]
9 Hb_003581_200 0.1126170519 - - PREDICTED: uncharacterized protein LOC105640179 [Jatropha curcas]
10 Hb_000212_230 0.1129364282 - - PREDICTED: endoribonuclease Dicer homolog 2 [Jatropha curcas]
11 Hb_000212_120 0.1140301988 - - hypothetical protein JCGZ_18070 [Jatropha curcas]
12 Hb_001157_230 0.1143381433 - - Protein AFR, putative [Ricinus communis]
13 Hb_001504_030 0.1144289072 - - PREDICTED: probable CCR4-associated factor 1 homolog 6 [Jatropha curcas]
14 Hb_001454_200 0.1159797219 transcription factor TF Family: TRAF PREDICTED: uncharacterized protein LOC105643434 [Jatropha curcas]
15 Hb_010128_100 0.1165118029 - - PREDICTED: probable L-cysteine desulfhydrase, chloroplastic [Jatropha curcas]
16 Hb_000049_020 0.1167055606 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
17 Hb_000613_070 0.1169776693 - - -
18 Hb_015934_120 0.1196430349 - - PREDICTED: callose synthase 7 [Vitis vinifera]
19 Hb_000320_340 0.1198129258 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
20 Hb_005800_030 0.1198356184 - - PREDICTED: lysM and putative peptidoglycan-binding domain-containing protein 4-like [Jatropha curcas]

Gene co-expression network

sample Hb_001951_150 Hb_001951_150 Hb_011214_090 Hb_011214_090 Hb_001951_150--Hb_011214_090 Hb_000016_210 Hb_000016_210 Hb_001951_150--Hb_000016_210 Hb_001946_050 Hb_001946_050 Hb_001951_150--Hb_001946_050 Hb_005463_110 Hb_005463_110 Hb_001951_150--Hb_005463_110 Hb_001314_080 Hb_001314_080 Hb_001951_150--Hb_001314_080 Hb_001999_210 Hb_001999_210 Hb_001951_150--Hb_001999_210 Hb_005357_160 Hb_005357_160 Hb_011214_090--Hb_005357_160 Hb_023371_020 Hb_023371_020 Hb_011214_090--Hb_023371_020 Hb_009898_050 Hb_009898_050 Hb_011214_090--Hb_009898_050 Hb_000120_370 Hb_000120_370 Hb_011214_090--Hb_000120_370 Hb_005725_130 Hb_005725_130 Hb_011214_090--Hb_005725_130 Hb_000521_250 Hb_000521_250 Hb_011214_090--Hb_000521_250 Hb_000212_230 Hb_000212_230 Hb_000016_210--Hb_000212_230 Hb_003581_200 Hb_003581_200 Hb_000016_210--Hb_003581_200 Hb_000139_080 Hb_000139_080 Hb_000016_210--Hb_000139_080 Hb_001699_220 Hb_001699_220 Hb_000016_210--Hb_001699_220 Hb_002006_150 Hb_002006_150 Hb_000016_210--Hb_002006_150 Hb_001957_020 Hb_001957_020 Hb_000016_210--Hb_001957_020 Hb_010883_190 Hb_010883_190 Hb_001946_050--Hb_010883_190 Hb_001946_050--Hb_001314_080 Hb_000189_480 Hb_000189_480 Hb_001946_050--Hb_000189_480 Hb_048093_010 Hb_048093_010 Hb_001946_050--Hb_048093_010 Hb_000140_340 Hb_000140_340 Hb_001946_050--Hb_000140_340 Hb_005463_110--Hb_001999_210 Hb_003544_160 Hb_003544_160 Hb_005463_110--Hb_003544_160 Hb_002414_050 Hb_002414_050 Hb_005463_110--Hb_002414_050 Hb_001662_100 Hb_001662_100 Hb_005463_110--Hb_001662_100 Hb_001369_750 Hb_001369_750 Hb_005463_110--Hb_001369_750 Hb_018292_010 Hb_018292_010 Hb_005463_110--Hb_018292_010 Hb_010883_040 Hb_010883_040 Hb_001314_080--Hb_010883_040 Hb_000023_260 Hb_000023_260 Hb_001314_080--Hb_000023_260 Hb_015934_120 Hb_015934_120 Hb_001314_080--Hb_015934_120 Hb_001504_030 Hb_001504_030 Hb_001314_080--Hb_001504_030 Hb_001314_080--Hb_000212_230 Hb_000665_130 Hb_000665_130 Hb_001314_080--Hb_000665_130 Hb_000613_070 Hb_000613_070 Hb_001999_210--Hb_000613_070 Hb_000186_050 Hb_000186_050 Hb_001999_210--Hb_000186_050 Hb_000789_200 Hb_000789_200 Hb_001999_210--Hb_000789_200 Hb_001999_210--Hb_003544_160 Hb_002768_060 Hb_002768_060 Hb_001999_210--Hb_002768_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.9128 12.1163 15.0085 29.6639 10.3509 9.55117
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.8939 9.95094 9.96787 15.8094 31.1332

CAGE analysis