Hb_001951_230

Information

Type -
Description -
Location Contig1951: 200035-208074
Sequence    

Annotation

kegg
ID rcu:RCOM_0634650
description phytochrome B, putative
nr
ID XP_012091887.1
description PREDICTED: phytochrome E isoform X2 [Jatropha curcas]
swissprot
ID P55004
description Phytochrome E OS=Ipomoea nil GN=PHYE PE=2 SV=1
trembl
ID A0A067JEN0
description Phytochrome OS=Jatropha curcas GN=JCGZ_21669 PE=3 SV=1
Gene Ontology
ID GO:0016020
description phytochrome e

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19510: 200394-200777 , PASA_asmbl_19512: 201898-202110 , PASA_asmbl_19513: 202275-208136 , PASA_asmbl_19514: 202859-203243 , PASA_asmbl_19515: 206204-206509 , PASA_asmbl_19516: 206866-207304
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001951_230 0.0 - - PREDICTED: phytochrome E isoform X2 [Jatropha curcas]
2 Hb_000215_290 0.0978062059 transcription factor TF Family: NAC PREDICTED: protein BEARSKIN2 isoform X2 [Jatropha curcas]
3 Hb_000326_080 0.1066594032 - - lrr receptor protein kinase, putative [Ricinus communis]
4 Hb_004907_070 0.1158304332 - - PREDICTED: protein phosphatase 2C 37 [Jatropha curcas]
5 Hb_000363_250 0.1184660191 - - PREDICTED: pirin-like protein [Malus domestica]
6 Hb_005271_180 0.1200268105 - - Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis]
7 Hb_001357_060 0.1265805855 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 18-like [Cicer arietinum]
8 Hb_001013_050 0.1280669659 - - unnamed protein product [Coffea canephora]
9 Hb_143871_010 0.1313568045 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
10 Hb_001213_030 0.1328962101 - - PAR1 protein [Theobroma cacao]
11 Hb_000613_250 0.1344272796 - - PREDICTED: nudix hydrolase 2-like [Jatropha curcas]
12 Hb_000472_020 0.1348787435 - - PREDICTED: uncharacterized protein LOC105641103 [Jatropha curcas]
13 Hb_000252_260 0.135600637 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
14 Hb_001706_020 0.1358647375 - - PREDICTED: organic cation/carnitine transporter 7 [Jatropha curcas]
15 Hb_003562_040 0.1363075301 - - PREDICTED: septum-promoting GTP-binding protein 1-like [Jatropha curcas]
16 Hb_003835_030 0.1365308683 - - glycosyltransferase, partial [Arabidopsis thaliana]
17 Hb_002809_120 0.136986841 - - Uncharacterized protein TCM_031281 [Theobroma cacao]
18 Hb_004605_020 0.1370176728 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [Jatropha curcas]
19 Hb_005034_010 0.1374982425 - - alcohol dehydrogenase, putative [Ricinus communis]
20 Hb_000477_110 0.1396739313 transcription factor TF Family: GRAS PREDICTED: DELLA protein SLR1-like [Jatropha curcas]

Gene co-expression network

sample Hb_001951_230 Hb_001951_230 Hb_000215_290 Hb_000215_290 Hb_001951_230--Hb_000215_290 Hb_000326_080 Hb_000326_080 Hb_001951_230--Hb_000326_080 Hb_004907_070 Hb_004907_070 Hb_001951_230--Hb_004907_070 Hb_000363_250 Hb_000363_250 Hb_001951_230--Hb_000363_250 Hb_005271_180 Hb_005271_180 Hb_001951_230--Hb_005271_180 Hb_001357_060 Hb_001357_060 Hb_001951_230--Hb_001357_060 Hb_001706_020 Hb_001706_020 Hb_000215_290--Hb_001706_020 Hb_144703_010 Hb_144703_010 Hb_000215_290--Hb_144703_010 Hb_000025_590 Hb_000025_590 Hb_000215_290--Hb_000025_590 Hb_143629_200 Hb_143629_200 Hb_000215_290--Hb_143629_200 Hb_001174_030 Hb_001174_030 Hb_000215_290--Hb_001174_030 Hb_005488_030 Hb_005488_030 Hb_000215_290--Hb_005488_030 Hb_001486_100 Hb_001486_100 Hb_000326_080--Hb_001486_100 Hb_000252_260 Hb_000252_260 Hb_000326_080--Hb_000252_260 Hb_031862_120 Hb_031862_120 Hb_000326_080--Hb_031862_120 Hb_143871_010 Hb_143871_010 Hb_000326_080--Hb_143871_010 Hb_002740_100 Hb_002740_100 Hb_000326_080--Hb_002740_100 Hb_019837_010 Hb_019837_010 Hb_004907_070--Hb_019837_010 Hb_000594_150 Hb_000594_150 Hb_004907_070--Hb_000594_150 Hb_004907_070--Hb_001357_060 Hb_002809_120 Hb_002809_120 Hb_004907_070--Hb_002809_120 Hb_004976_080 Hb_004976_080 Hb_004907_070--Hb_004976_080 Hb_000659_040 Hb_000659_040 Hb_000363_250--Hb_000659_040 Hb_000363_250--Hb_000215_290 Hb_000363_250--Hb_144703_010 Hb_000363_250--Hb_005271_180 Hb_000613_250 Hb_000613_250 Hb_000363_250--Hb_000613_250 Hb_007007_090 Hb_007007_090 Hb_005271_180--Hb_007007_090 Hb_004143_140 Hb_004143_140 Hb_005271_180--Hb_004143_140 Hb_005074_010 Hb_005074_010 Hb_005271_180--Hb_005074_010 Hb_001046_040 Hb_001046_040 Hb_005271_180--Hb_001046_040 Hb_044624_010 Hb_044624_010 Hb_005271_180--Hb_044624_010 Hb_001357_060--Hb_002809_120 Hb_001179_010 Hb_001179_010 Hb_001357_060--Hb_001179_010 Hb_002783_140 Hb_002783_140 Hb_001357_060--Hb_002783_140 Hb_003905_040 Hb_003905_040 Hb_001357_060--Hb_003905_040 Hb_000477_110 Hb_000477_110 Hb_001357_060--Hb_000477_110 Hb_000007_440 Hb_000007_440 Hb_001357_060--Hb_000007_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.139311 12.1574 5.63618 8.95228 0.0708608 0.26093
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.611243 0.248809 0.063735 4.27974 10.7386

CAGE analysis