Hb_001951_250

Information

Type -
Description -
Location Contig1951: 219435-221024
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001951_250 0.0 - - -
2 Hb_000130_230 0.1434588202 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF098-like [Jatropha curcas]
3 Hb_000371_070 0.2286043059 - - PREDICTED: uncharacterized protein LOC103863319 [Brassica rapa]
4 Hb_003777_360 0.2411038487 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
5 Hb_001477_150 0.2484989271 - - o-methyltransferase, putative [Ricinus communis]
6 Hb_007426_050 0.2509167322 transcription factor TF Family: Tify JAZ8 [Hevea brasiliensis]
7 Hb_002067_140 0.2549415822 - - -
8 Hb_001488_370 0.259204281 - - Esterase PIR7B, putative [Ricinus communis]
9 Hb_009974_020 0.2663169827 - - PREDICTED: uncharacterized protein LOC104427753 [Eucalyptus grandis]
10 Hb_000892_070 0.2672133714 - - PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Jatropha curcas]
11 Hb_001369_600 0.2693583185 - - kinase, putative [Ricinus communis]
12 Hb_001369_450 0.2714458607 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
13 Hb_003020_170 0.2727399004 - - Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis]
14 Hb_001767_050 0.274751178 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001348_230 0.279291278 transcription factor TF Family: TRAF protein with unknown function [Ricinus communis]
16 Hb_012053_040 0.2796747005 - - PREDICTED: putative phospholipid:diacylglycerol acyltransferase 2 [Jatropha curcas]
17 Hb_000979_250 0.2801898013 - - conserved hypothetical protein [Ricinus communis]
18 Hb_010519_030 0.281241152 - - -
19 Hb_001143_070 0.2839228286 - - Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]
20 Hb_002478_020 0.284303629 - - hypothetical protein POPTR_0010s19120g [Populus trichocarpa]

Gene co-expression network

sample Hb_001951_250 Hb_001951_250 Hb_000130_230 Hb_000130_230 Hb_001951_250--Hb_000130_230 Hb_000371_070 Hb_000371_070 Hb_001951_250--Hb_000371_070 Hb_003777_360 Hb_003777_360 Hb_001951_250--Hb_003777_360 Hb_001477_150 Hb_001477_150 Hb_001951_250--Hb_001477_150 Hb_007426_050 Hb_007426_050 Hb_001951_250--Hb_007426_050 Hb_002067_140 Hb_002067_140 Hb_001951_250--Hb_002067_140 Hb_000130_230--Hb_003777_360 Hb_003891_080 Hb_003891_080 Hb_000130_230--Hb_003891_080 Hb_000130_230--Hb_001477_150 Hb_001767_050 Hb_001767_050 Hb_000130_230--Hb_001767_050 Hb_000892_070 Hb_000892_070 Hb_000130_230--Hb_000892_070 Hb_001433_100 Hb_001433_100 Hb_000371_070--Hb_001433_100 Hb_008066_030 Hb_008066_030 Hb_000371_070--Hb_008066_030 Hb_003060_040 Hb_003060_040 Hb_000371_070--Hb_003060_040 Hb_001579_140 Hb_001579_140 Hb_000371_070--Hb_001579_140 Hb_034482_040 Hb_034482_040 Hb_000371_070--Hb_034482_040 Hb_000117_100 Hb_000117_100 Hb_003777_360--Hb_000117_100 Hb_009974_020 Hb_009974_020 Hb_003777_360--Hb_009974_020 Hb_000836_490 Hb_000836_490 Hb_003777_360--Hb_000836_490 Hb_028271_020 Hb_028271_020 Hb_003777_360--Hb_028271_020 Hb_001488_370 Hb_001488_370 Hb_003777_360--Hb_001488_370 Hb_008438_010 Hb_008438_010 Hb_001477_150--Hb_008438_010 Hb_003020_170 Hb_003020_170 Hb_001477_150--Hb_003020_170 Hb_000943_060 Hb_000943_060 Hb_001477_150--Hb_000943_060 Hb_002046_070 Hb_002046_070 Hb_001477_150--Hb_002046_070 Hb_012053_040 Hb_012053_040 Hb_007426_050--Hb_012053_040 Hb_000563_260 Hb_000563_260 Hb_007426_050--Hb_000563_260 Hb_001348_230 Hb_001348_230 Hb_007426_050--Hb_001348_230 Hb_001369_600 Hb_001369_600 Hb_007426_050--Hb_001369_600 Hb_029879_090 Hb_029879_090 Hb_007426_050--Hb_029879_090 Hb_141194_010 Hb_141194_010 Hb_007426_050--Hb_141194_010 Hb_001776_170 Hb_001776_170 Hb_002067_140--Hb_001776_170 Hb_002067_140--Hb_001369_600 Hb_012053_050 Hb_012053_050 Hb_002067_140--Hb_012053_050 Hb_001369_450 Hb_001369_450 Hb_002067_140--Hb_001369_450 Hb_002067_140--Hb_001488_370 Hb_000094_110 Hb_000094_110 Hb_002067_140--Hb_000094_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.194637 0.0481128 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.146207 0.803959 0.577294 0.0479929 0

CAGE analysis