Hb_001951_270

Information

Type -
Description -
Location Contig1951: 230757-231736
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID A0A0D3CM24
description Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l32-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001951_270 0.0 - - -
2 Hb_126216_010 0.0912768494 - - PREDICTED: 60S ribosomal protein L9 [Jatropha curcas]
3 Hb_009659_010 0.1150105015 - - PREDICTED: mediator of RNA polymerase II transcription subunit 9 [Vitis vinifera]
4 Hb_000645_190 0.1351179523 - - PREDICTED: 60S ribosomal protein L29-1-like [Glycine max]
5 Hb_003607_170 0.1371124502 - - U6 snRNA-associated Sm-like protein LSm5 [Hevea brasiliensis]
6 Hb_026398_010 0.1405934964 - - hypothetical protein B456_010G132100 [Gossypium raimondii]
7 Hb_000975_250 0.1412501403 - - PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like [Jatropha curcas]
8 Hb_003988_040 0.1429810217 - - PREDICTED: uncharacterized protein LOC105633684 [Jatropha curcas]
9 Hb_000805_130 0.1467610642 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004007_180 0.1479966198 - - PREDICTED: uncharacterized protein LOC105639838 [Jatropha curcas]
11 Hb_000617_090 0.1513743397 - - hypoia-responsive family protein 4 [Hevea brasiliensis]
12 Hb_124055_010 0.1518557799 - - mitochondrial inner membrane protease subunit, putative [Ricinus communis]
13 Hb_000045_250 0.1530737006 - - PREDICTED: uncharacterized protein LOC105646572 isoform X1 [Jatropha curcas]
14 Hb_003549_020 0.1533798959 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000042_260 0.1535354975 - - PREDICTED: uncharacterized protein LOC105632814 [Jatropha curcas]
16 Hb_097007_010 0.1547553525 - - hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]
17 Hb_012251_010 0.1567570421 - - -
18 Hb_000212_210 0.1574946522 - - unnamed protein product [Coffea canephora]
19 Hb_000948_210 0.1578076689 - - PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial [Jatropha curcas]
20 Hb_000134_020 0.1595716288 - - thioredoxin-like family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_001951_270 Hb_001951_270 Hb_126216_010 Hb_126216_010 Hb_001951_270--Hb_126216_010 Hb_009659_010 Hb_009659_010 Hb_001951_270--Hb_009659_010 Hb_000645_190 Hb_000645_190 Hb_001951_270--Hb_000645_190 Hb_003607_170 Hb_003607_170 Hb_001951_270--Hb_003607_170 Hb_026398_010 Hb_026398_010 Hb_001951_270--Hb_026398_010 Hb_000975_250 Hb_000975_250 Hb_001951_270--Hb_000975_250 Hb_126216_010--Hb_000975_250 Hb_126216_010--Hb_009659_010 Hb_000565_030 Hb_000565_030 Hb_126216_010--Hb_000565_030 Hb_000045_250 Hb_000045_250 Hb_126216_010--Hb_000045_250 Hb_012251_010 Hb_012251_010 Hb_126216_010--Hb_012251_010 Hb_004421_020 Hb_004421_020 Hb_009659_010--Hb_004421_020 Hb_021924_010 Hb_021924_010 Hb_009659_010--Hb_021924_010 Hb_003988_040 Hb_003988_040 Hb_009659_010--Hb_003988_040 Hb_009659_010--Hb_000975_250 Hb_003549_020 Hb_003549_020 Hb_000645_190--Hb_003549_020 Hb_001769_100 Hb_001769_100 Hb_000645_190--Hb_001769_100 Hb_000085_330 Hb_000085_330 Hb_000645_190--Hb_000085_330 Hb_000134_020 Hb_000134_020 Hb_000645_190--Hb_000134_020 Hb_000236_460 Hb_000236_460 Hb_000645_190--Hb_000236_460 Hb_003058_220 Hb_003058_220 Hb_000645_190--Hb_003058_220 Hb_003607_170--Hb_003988_040 Hb_000617_090 Hb_000617_090 Hb_003607_170--Hb_000617_090 Hb_008847_020 Hb_008847_020 Hb_003607_170--Hb_008847_020 Hb_010883_150 Hb_010883_150 Hb_003607_170--Hb_010883_150 Hb_000526_150 Hb_000526_150 Hb_003607_170--Hb_000526_150 Hb_005463_060 Hb_005463_060 Hb_003607_170--Hb_005463_060 Hb_172221_010 Hb_172221_010 Hb_026398_010--Hb_172221_010 Hb_011311_010 Hb_011311_010 Hb_026398_010--Hb_011311_010 Hb_002660_030 Hb_002660_030 Hb_026398_010--Hb_002660_030 Hb_000329_020 Hb_000329_020 Hb_026398_010--Hb_000329_020 Hb_000042_260 Hb_000042_260 Hb_026398_010--Hb_000042_260 Hb_002588_010 Hb_002588_010 Hb_026398_010--Hb_002588_010 Hb_001080_080 Hb_001080_080 Hb_000975_250--Hb_001080_080 Hb_000975_250--Hb_003607_170 Hb_000948_190 Hb_000948_190 Hb_000975_250--Hb_000948_190 Hb_000975_250--Hb_000617_090 Hb_144598_020 Hb_144598_020 Hb_000975_250--Hb_144598_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.39962 1.33024 2.72902 3.08278 0.352216 6.86705
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.56089 21.7186 3.70372 2.39947 1.12184

CAGE analysis