Hb_001952_040

Information

Type -
Description -
Location Contig1952: 82894-87437
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P0CT40
description Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001952_040 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_079067_010 0.281998839 - - PREDICTED: protein SPT2 homolog [Malus domestica]
3 Hb_086077_020 0.2873148165 - - hypothetical protein PHAVU_001G054900g [Phaseolus vulgaris]
4 Hb_089419_010 0.2975934664 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
5 Hb_004440_080 0.3212782774 - - PREDICTED: syntaxin-112 [Populus euphratica]
6 Hb_000012_460 0.3348532304 - - unknown [Populus trichocarpa]
7 Hb_000948_090 0.3494898449 - - carbonic anhydrase, putative [Ricinus communis]
8 Hb_000772_040 0.3561195938 - - PREDICTED: uncharacterized protein LOC105036273 [Elaeis guineensis]
9 Hb_000154_010 0.3567702852 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_000165_150 0.3601124752 - - PREDICTED: pistil-specific extensin-like protein [Jatropha curcas]
11 Hb_105028_010 0.3682837411 - - Retrotransposon protein, putative [Theobroma cacao]
12 Hb_133820_010 0.3851554561 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
13 Hb_000630_040 0.385159091 transcription factor TF Family: bZIP PREDICTED: protein ABSCISIC ACID-INSENSITIVE 5 [Jatropha curcas]
14 Hb_003780_070 0.3859540833 - - PREDICTED: pirin-like protein [Jatropha curcas]
15 Hb_010977_010 0.3931099169 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_006909_040 0.3995584704 - - -
17 Hb_007426_160 0.4018808542 - - -
18 Hb_000258_340 0.4038069063 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26900, mitochondrial [Jatropha curcas]
19 Hb_094900_010 0.4049084872 - - ankyrin repeat-containing protein, putative [Ricinus communis]
20 Hb_026239_010 0.4142633198 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]

Gene co-expression network

sample Hb_001952_040 Hb_001952_040 Hb_079067_010 Hb_079067_010 Hb_001952_040--Hb_079067_010 Hb_086077_020 Hb_086077_020 Hb_001952_040--Hb_086077_020 Hb_089419_010 Hb_089419_010 Hb_001952_040--Hb_089419_010 Hb_004440_080 Hb_004440_080 Hb_001952_040--Hb_004440_080 Hb_000012_460 Hb_000012_460 Hb_001952_040--Hb_000012_460 Hb_000948_090 Hb_000948_090 Hb_001952_040--Hb_000948_090 Hb_001579_240 Hb_001579_240 Hb_079067_010--Hb_001579_240 Hb_000001_080 Hb_000001_080 Hb_079067_010--Hb_000001_080 Hb_005375_020 Hb_005375_020 Hb_079067_010--Hb_005375_020 Hb_003780_070 Hb_003780_070 Hb_079067_010--Hb_003780_070 Hb_000630_040 Hb_000630_040 Hb_079067_010--Hb_000630_040 Hb_086077_020--Hb_004440_080 Hb_086077_020--Hb_000012_460 Hb_000258_340 Hb_000258_340 Hb_086077_020--Hb_000258_340 Hb_010977_010 Hb_010977_010 Hb_086077_020--Hb_010977_010 Hb_000772_040 Hb_000772_040 Hb_086077_020--Hb_000772_040 Hb_133820_010 Hb_133820_010 Hb_086077_020--Hb_133820_010 Hb_089419_010--Hb_000948_090 Hb_000165_150 Hb_000165_150 Hb_089419_010--Hb_000165_150 Hb_139576_010 Hb_139576_010 Hb_089419_010--Hb_139576_010 Hb_003002_030 Hb_003002_030 Hb_089419_010--Hb_003002_030 Hb_166124_010 Hb_166124_010 Hb_089419_010--Hb_166124_010 Hb_004440_080--Hb_000012_460 Hb_004440_080--Hb_000258_340 Hb_002888_020 Hb_002888_020 Hb_004440_080--Hb_002888_020 Hb_002602_020 Hb_002602_020 Hb_004440_080--Hb_002602_020 Hb_004440_080--Hb_010977_010 Hb_007426_160 Hb_007426_160 Hb_000012_460--Hb_007426_160 Hb_000012_460--Hb_000772_040 Hb_000932_100 Hb_000932_100 Hb_000012_460--Hb_000932_100 Hb_001006_260 Hb_001006_260 Hb_000012_460--Hb_001006_260 Hb_004448_020 Hb_004448_020 Hb_000012_460--Hb_004448_020 Hb_001106_050 Hb_001106_050 Hb_000948_090--Hb_001106_050 Hb_000948_090--Hb_000165_150 Hb_000948_090--Hb_139576_010 Hb_000154_010 Hb_000154_010 Hb_000948_090--Hb_000154_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0117606 0 0 0 0 0.0126435
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0107788 0 0.0162924 0 0.0181788

CAGE analysis