Hb_001952_070

Information

Type -
Description -
Location Contig1952: 98632-101773
Sequence    

Annotation

kegg
ID pda:103707954
description 40S ribosomal protein S6
nr
ID ADR71292.1
description 40S ribosomal protein S6B [Hevea brasiliensis]
swissprot
ID Q9M3V8
description 40S ribosomal protein S6 OS=Asparagus officinalis GN=rps6 PE=2 SV=1
trembl
ID I3NMQ5
description 40S ribosomal protein S6 OS=Hevea brasiliensis GN=RPS6B PE=2 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19538: 98658-101781
cDNA
(Sanger)
(ID:Location)		 014_E01.ab1: 99068-101778 , 035_C13.ab1: 99048-101778 , 037_C19.ab1: 98970-101778 , 045_H12.ab1: 98994-101781

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001952_070 0.0 - - 40S ribosomal protein S6B [Hevea brasiliensis]
2 Hb_000363_170 0.109513293 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003581_140 0.1105582575 - - PREDICTED: hypersensitive-induced response protein 1-like [Nelumbo nucifera]
4 Hb_006816_360 0.1143507156 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 3 [Jatropha curcas]
5 Hb_002169_010 0.1158309265 - - PREDICTED: la-related protein 6B [Jatropha curcas]
6 Hb_000608_120 0.1211516097 - - PREDICTED: uncharacterized protein LOC105644872 [Jatropha curcas]
7 Hb_000027_270 0.1231169305 - - PREDICTED: zinc finger protein 6 [Jatropha curcas]
8 Hb_127979_010 0.1233354088 - - PREDICTED: uncharacterized protein LOC105629383 [Jatropha curcas]
9 Hb_005215_080 0.1247796534 - - PREDICTED: cyclin-D3-3 [Jatropha curcas]
10 Hb_011496_010 0.1276368597 - - PREDICTED: pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Jatropha curcas]
11 Hb_029281_010 0.1276803049 - - hypothetical protein JCGZ_04025 [Jatropha curcas]
12 Hb_000088_010 0.1277513106 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_003638_140 0.129706029 - - protein binding protein, putative [Ricinus communis]
14 Hb_000138_040 0.1300190308 - - PREDICTED: uncharacterized protein LOC105646531 [Jatropha curcas]
15 Hb_000490_030 0.131719847 - - DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
16 Hb_010866_040 0.1328058384 - - PREDICTED: metal transporter Nramp2-like [Jatropha curcas]
17 Hb_003638_030 0.1329069636 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
18 Hb_004735_010 0.1336176922 - - PREDICTED: protein arginine N-methyltransferase PRMT10 [Vitis vinifera]
19 Hb_000134_350 0.1351473405 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 8-like [Jatropha curcas]
20 Hb_003494_240 0.1380948987 - - PREDICTED: uncharacterized protein LOC105644075 [Jatropha curcas]

Gene co-expression network

sample Hb_001952_070 Hb_001952_070 Hb_000363_170 Hb_000363_170 Hb_001952_070--Hb_000363_170 Hb_003581_140 Hb_003581_140 Hb_001952_070--Hb_003581_140 Hb_006816_360 Hb_006816_360 Hb_001952_070--Hb_006816_360 Hb_002169_010 Hb_002169_010 Hb_001952_070--Hb_002169_010 Hb_000608_120 Hb_000608_120 Hb_001952_070--Hb_000608_120 Hb_000027_270 Hb_000027_270 Hb_001952_070--Hb_000027_270 Hb_010866_040 Hb_010866_040 Hb_000363_170--Hb_010866_040 Hb_002740_130 Hb_002740_130 Hb_000363_170--Hb_002740_130 Hb_005215_080 Hb_005215_080 Hb_000363_170--Hb_005215_080 Hb_002493_100 Hb_002493_100 Hb_000363_170--Hb_002493_100 Hb_001439_180 Hb_001439_180 Hb_000363_170--Hb_001439_180 Hb_000078_130 Hb_000078_130 Hb_003581_140--Hb_000078_130 Hb_003581_140--Hb_000608_120 Hb_000490_030 Hb_000490_030 Hb_003581_140--Hb_000490_030 Hb_002039_010 Hb_002039_010 Hb_003581_140--Hb_002039_010 Hb_002890_340 Hb_002890_340 Hb_003581_140--Hb_002890_340 Hb_000418_100 Hb_000418_100 Hb_003581_140--Hb_000418_100 Hb_127979_010 Hb_127979_010 Hb_006816_360--Hb_127979_010 Hb_003638_140 Hb_003638_140 Hb_006816_360--Hb_003638_140 Hb_000176_140 Hb_000176_140 Hb_006816_360--Hb_000176_140 Hb_004242_100 Hb_004242_100 Hb_006816_360--Hb_004242_100 Hb_000700_090 Hb_000700_090 Hb_006816_360--Hb_000700_090 Hb_026048_090 Hb_026048_090 Hb_006816_360--Hb_026048_090 Hb_029281_010 Hb_029281_010 Hb_002169_010--Hb_029281_010 Hb_011496_010 Hb_011496_010 Hb_002169_010--Hb_011496_010 Hb_160818_010 Hb_160818_010 Hb_002169_010--Hb_160818_010 Hb_000462_150 Hb_000462_150 Hb_002169_010--Hb_000462_150 Hb_002377_050 Hb_002377_050 Hb_002169_010--Hb_002377_050 Hb_002818_040 Hb_002818_040 Hb_002169_010--Hb_002818_040 Hb_003494_240 Hb_003494_240 Hb_000608_120--Hb_003494_240 Hb_001454_060 Hb_001454_060 Hb_000608_120--Hb_001454_060 Hb_002215_050 Hb_002215_050 Hb_000608_120--Hb_002215_050 Hb_000608_120--Hb_003638_140 Hb_000703_080 Hb_000703_080 Hb_000608_120--Hb_000703_080 Hb_000027_270--Hb_000700_090 Hb_000027_270--Hb_003494_240 Hb_005488_070 Hb_005488_070 Hb_000027_270--Hb_005488_070 Hb_000027_270--Hb_000078_130 Hb_000027_270--Hb_001454_060 Hb_000027_270--Hb_127979_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1863.87 437.996 83.6021 120.545 1145.97 2293.47
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1021.36 687.858 1380.86 966.469 82.7009

CAGE analysis