Hb_001952_100

Information

Type -
Description -
Location Contig1952: 114130-117948
Sequence    

Annotation

kegg
ID vvi:100251372
description ABC transporter G family member 11-like
nr
ID XP_012069282.1
description PREDICTED: LOW QUALITY PROTEIN: ABC transporter G family member 2-like [Jatropha curcas]
swissprot
ID Q8RXN0
description ABC transporter G family member 11 OS=Arabidopsis thaliana GN=ABCG11 PE=1 SV=1
trembl
ID A0A067L105
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24917 PE=3 SV=1
Gene Ontology
ID GO:0016020
description abc transporter g family member 11-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19540: 114116-114278 , PASA_asmbl_19541: 114315-116065 , PASA_asmbl_19542: 116583-117511
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001952_100 0.0 - - PREDICTED: LOW QUALITY PROTEIN: ABC transporter G family member 2-like [Jatropha curcas]
2 Hb_000155_280 0.0844504987 - - PREDICTED: GDSL esterase/lipase At5g45950 [Jatropha curcas]
3 Hb_006485_020 0.0845211493 - - hypothetical protein JCGZ_15092 [Jatropha curcas]
4 Hb_017959_020 0.0896741093 - - hypothetical protein POPTR_0011s03440g [Populus trichocarpa]
5 Hb_002026_040 0.0897061866 - - PREDICTED: cytochrome P450 86A7 [Jatropha curcas]
6 Hb_002376_020 0.091588595 - - lectin, partial [Lathyrus palustris]
7 Hb_002843_200 0.0922170959 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000227_010 0.0942998521 - - hypothetical protein JCGZ_02114 [Jatropha curcas]
9 Hb_013849_010 0.0952367788 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
10 Hb_005170_050 0.1017923159 - - PREDICTED: double-stranded RNA-binding protein 2-like [Populus euphratica]
11 Hb_001061_010 0.1039162024 - - PREDICTED: uncharacterized protein LOC100243595 [Vitis vinifera]
12 Hb_005550_060 0.1054864864 transcription factor TF Family: MYB-related transcription factor, putative [Ricinus communis]
13 Hb_007816_010 0.1061592387 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
14 Hb_002837_010 0.1062330977 - - hypothetical protein POPTR_0497s00200g [Populus trichocarpa]
15 Hb_002585_050 0.106498721 - - conserved hypothetical protein [Ricinus communis]
16 Hb_011846_020 0.1065916578 - - hypothetical protein POPTR_0019s13390g [Populus trichocarpa]
17 Hb_002186_150 0.1067689542 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
18 Hb_046150_010 0.106772526 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 6-like isoform X1 [Citrus sinensis]
19 Hb_004744_030 0.107116494 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
20 Hb_000500_380 0.1072075443 - - PREDICTED: GDSL esterase/lipase At5g45670-like [Jatropha curcas]

Gene co-expression network

sample Hb_001952_100 Hb_001952_100 Hb_000155_280 Hb_000155_280 Hb_001952_100--Hb_000155_280 Hb_006485_020 Hb_006485_020 Hb_001952_100--Hb_006485_020 Hb_017959_020 Hb_017959_020 Hb_001952_100--Hb_017959_020 Hb_002026_040 Hb_002026_040 Hb_001952_100--Hb_002026_040 Hb_002376_020 Hb_002376_020 Hb_001952_100--Hb_002376_020 Hb_002843_200 Hb_002843_200 Hb_001952_100--Hb_002843_200 Hb_000155_280--Hb_006485_020 Hb_000155_280--Hb_002026_040 Hb_000155_280--Hb_017959_020 Hb_013849_010 Hb_013849_010 Hb_000155_280--Hb_013849_010 Hb_000155_280--Hb_002376_020 Hb_005170_050 Hb_005170_050 Hb_000155_280--Hb_005170_050 Hb_006485_020--Hb_017959_020 Hb_006485_020--Hb_002376_020 Hb_006485_020--Hb_002026_040 Hb_006485_020--Hb_005170_050 Hb_000005_390 Hb_000005_390 Hb_006485_020--Hb_000005_390 Hb_017959_020--Hb_002026_040 Hb_017959_020--Hb_005170_050 Hb_011218_020 Hb_011218_020 Hb_017959_020--Hb_011218_020 Hb_017959_020--Hb_002376_020 Hb_002026_040--Hb_013849_010 Hb_002585_050 Hb_002585_050 Hb_002026_040--Hb_002585_050 Hb_007816_010 Hb_007816_010 Hb_002026_040--Hb_007816_010 Hb_000592_150 Hb_000592_150 Hb_002026_040--Hb_000592_150 Hb_004228_050 Hb_004228_050 Hb_002026_040--Hb_004228_050 Hb_005550_060 Hb_005550_060 Hb_002376_020--Hb_005550_060 Hb_008252_010 Hb_008252_010 Hb_002376_020--Hb_008252_010 Hb_002376_020--Hb_005170_050 Hb_002376_020--Hb_000005_390 Hb_002843_200--Hb_002026_040 Hb_002843_200--Hb_013849_010 Hb_002843_200--Hb_000155_280 Hb_000227_010 Hb_000227_010 Hb_002843_200--Hb_000227_010 Hb_002843_200--Hb_006485_020 Hb_002843_200--Hb_007816_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0575308 0 3.68154 0.430674 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0365034

CAGE analysis