Hb_001952_110

Information

Type -
Description -
Location Contig1952: 121439-124989
Sequence    

Annotation

kegg
ID rcu:RCOM_0823630
description Ent-kaurene synthase B, chloroplast precursor, putative (EC:4.2.3.19)
nr
ID XP_002525841.1
description Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q39548
description Ent-kaur-16-ene synthase, chloroplastic OS=Cucurbita maxima PE=1 SV=1
trembl
ID B9SIM2
description Ent-kaurene synthase B, chloroplast, putative OS=Ricinus communis GN=RCOM_0823630 PE=4 SV=1
Gene Ontology
ID GO:0000287
description ent-kaurene synthase chloroplast

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19543: 121359-121791 , PASA_asmbl_19544: 121855-122682 , PASA_asmbl_19545: 122002-122682 , PASA_asmbl_19546: 122002-122648 , PASA_asmbl_19547: 122690-123522 , PASA_asmbl_19548: 122870-124975
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001952_110 0.0 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
2 Hb_001951_090 0.1087373054 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
3 Hb_012019_020 0.1164554253 - - Nonspecific lipid-transfer protein precursor, putative [Ricinus communis]
4 Hb_001596_040 0.1217846428 - - PREDICTED: caffeic acid 3-O-methyltransferase 1-like [Populus euphratica]
5 Hb_000101_050 0.1220624604 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
6 Hb_008020_010 0.1255098634 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like [Jatropha curcas]
7 Hb_005550_070 0.1274097285 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 75 [Populus euphratica]
8 Hb_000597_110 0.1284147613 - - PREDICTED: VQ motif-containing protein 22-like [Jatropha curcas]
9 Hb_002917_020 0.1289379824 - - predicted protein [Arabidopsis lyrata subsp. lyrata]
10 Hb_002234_150 0.1329295442 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
11 Hb_003677_010 0.1350323159 transcription factor TF Family: SRS PREDICTED: protein SHI RELATED SEQUENCE 1 [Jatropha curcas]
12 Hb_006446_060 0.138706672 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Populus euphratica]
13 Hb_000917_150 0.1391503397 - - conserved hypothetical protein [Ricinus communis]
14 Hb_011628_030 0.1404185193 - - conserved hypothetical protein [Ricinus communis]
15 Hb_008503_020 0.1410505662 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
16 Hb_005993_070 0.1437368883 - - lipid binding protein, putative [Ricinus communis]
17 Hb_004931_060 0.1476787335 transcription factor TF Family: MYB-related PREDICTED: myb-related protein Myb4 [Nelumbo nucifera]
18 Hb_006452_050 0.1481156182 - - PREDICTED: GABA transporter 1-like [Jatropha curcas]
19 Hb_001902_180 0.1485069836 - - PREDICTED: uncharacterized protein LOC105129658 [Populus euphratica]
20 Hb_017987_040 0.1487936411 transcription factor TF Family: MYB hypothetical protein POPTR_0002s11440g [Populus trichocarpa]

Gene co-expression network

sample Hb_001952_110 Hb_001952_110 Hb_001951_090 Hb_001951_090 Hb_001952_110--Hb_001951_090 Hb_012019_020 Hb_012019_020 Hb_001952_110--Hb_012019_020 Hb_001596_040 Hb_001596_040 Hb_001952_110--Hb_001596_040 Hb_000101_050 Hb_000101_050 Hb_001952_110--Hb_000101_050 Hb_008020_010 Hb_008020_010 Hb_001952_110--Hb_008020_010 Hb_005550_070 Hb_005550_070 Hb_001952_110--Hb_005550_070 Hb_002917_020 Hb_002917_020 Hb_001951_090--Hb_002917_020 Hb_001951_090--Hb_008020_010 Hb_000917_150 Hb_000917_150 Hb_001951_090--Hb_000917_150 Hb_002917_030 Hb_002917_030 Hb_001951_090--Hb_002917_030 Hb_001951_090--Hb_012019_020 Hb_001013_040 Hb_001013_040 Hb_012019_020--Hb_001013_040 Hb_012019_020--Hb_001596_040 Hb_012019_020--Hb_000101_050 Hb_007875_070 Hb_007875_070 Hb_012019_020--Hb_007875_070 Hb_006452_050 Hb_006452_050 Hb_012019_020--Hb_006452_050 Hb_002171_070 Hb_002171_070 Hb_001596_040--Hb_002171_070 Hb_001596_040--Hb_002917_030 Hb_003086_200 Hb_003086_200 Hb_001596_040--Hb_003086_200 Hb_004931_060 Hb_004931_060 Hb_001596_040--Hb_004931_060 Hb_000556_200 Hb_000556_200 Hb_001596_040--Hb_000556_200 Hb_006446_060 Hb_006446_060 Hb_000101_050--Hb_006446_060 Hb_041769_010 Hb_041769_010 Hb_000101_050--Hb_041769_010 Hb_001902_180 Hb_001902_180 Hb_000101_050--Hb_001902_180 Hb_005993_070 Hb_005993_070 Hb_000101_050--Hb_005993_070 Hb_005731_080 Hb_005731_080 Hb_000101_050--Hb_005731_080 Hb_059162_010 Hb_059162_010 Hb_000101_050--Hb_059162_010 Hb_008020_010--Hb_002917_030 Hb_008020_010--Hb_001596_040 Hb_008225_100 Hb_008225_100 Hb_008020_010--Hb_008225_100 Hb_008020_010--Hb_002917_020 Hb_005846_010 Hb_005846_010 Hb_005550_070--Hb_005846_010 Hb_011628_030 Hb_011628_030 Hb_005550_070--Hb_011628_030 Hb_125876_010 Hb_125876_010 Hb_005550_070--Hb_125876_010 Hb_047163_010 Hb_047163_010 Hb_005550_070--Hb_047163_010 Hb_004109_300 Hb_004109_300 Hb_005550_070--Hb_004109_300 Hb_156949_010 Hb_156949_010 Hb_005550_070--Hb_156949_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.88126 0.435462 0.165987 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.13557 0.121915 0.0289987 8.04174 0.161641

CAGE analysis