Hb_001952_120

Information

Type -
Description -
Location Contig1952: 126919-133216
Sequence    

Annotation

kegg
ID rcu:RCOM_0823750
description poly-A binding protein, putative
nr
ID XP_012069150.1
description PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Jatropha curcas]
swissprot
ID Q9LX90
description Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PABN3 PE=1 SV=1
trembl
ID A0A067KXI2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24915 PE=4 SV=1
Gene Ontology
ID GO:0000166
description polyadenylate-binding protein 2-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19549: 126910-133100 , PASA_asmbl_19550: 129419-129652
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001952_120 0.0 - - PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Jatropha curcas]
2 Hb_001140_030 0.057552329 - - PREDICTED: E3 ubiquitin-protein ligase XBAT33 [Jatropha curcas]
3 Hb_005965_030 0.0810809703 - - hypothetical protein JCGZ_16415 [Jatropha curcas]
4 Hb_000922_020 0.0823093865 - - protein binding protein, putative [Ricinus communis]
5 Hb_001636_050 0.0847943191 transcription factor TF Family: NF-X1 nuclear transcription factor, X-box binding, putative [Ricinus communis]
6 Hb_010998_040 0.0867564599 transcription factor TF Family: MYB myb3r3, putative [Ricinus communis]
7 Hb_002027_060 0.0884992673 - - PREDICTED: exosome complex component RRP4 [Jatropha curcas]
8 Hb_001307_080 0.0887241828 - - PREDICTED: phospholipid--sterol O-acyltransferase [Jatropha curcas]
9 Hb_000023_320 0.0891035963 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002739_130 0.0892706981 - - PREDICTED: pre-mRNA-splicing factor 38B-like [Populus euphratica]
11 Hb_002157_260 0.0895617138 - - PREDICTED: partner of Y14 and mago-like [Jatropha curcas]
12 Hb_105641_010 0.089832848 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
13 Hb_004631_190 0.0906438713 - - PREDICTED: protein SCAI homolog [Jatropha curcas]
14 Hb_002896_060 0.0911667538 - - PREDICTED: synaptotagmin-2 [Jatropha curcas]
15 Hb_000679_340 0.0912486297 - - PREDICTED: uncharacterized protein LOC105650070 isoform X1 [Jatropha curcas]
16 Hb_001405_190 0.0915380382 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial [Jatropha curcas]
17 Hb_007929_080 0.0917119088 - - PREDICTED: transforming growth factor-beta receptor-associated protein 1 [Jatropha curcas]
18 Hb_005288_080 0.0924857704 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002042_030 0.0926342422 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
20 Hb_001301_220 0.0933294183 - - PREDICTED: polyadenylate-binding protein-interacting protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_001952_120 Hb_001952_120 Hb_001140_030 Hb_001140_030 Hb_001952_120--Hb_001140_030 Hb_005965_030 Hb_005965_030 Hb_001952_120--Hb_005965_030 Hb_000922_020 Hb_000922_020 Hb_001952_120--Hb_000922_020 Hb_001636_050 Hb_001636_050 Hb_001952_120--Hb_001636_050 Hb_010998_040 Hb_010998_040 Hb_001952_120--Hb_010998_040 Hb_002027_060 Hb_002027_060 Hb_001952_120--Hb_002027_060 Hb_001140_030--Hb_010998_040 Hb_032264_060 Hb_032264_060 Hb_001140_030--Hb_032264_060 Hb_004631_190 Hb_004631_190 Hb_001140_030--Hb_004631_190 Hb_001140_030--Hb_005965_030 Hb_001405_190 Hb_001405_190 Hb_001140_030--Hb_001405_190 Hb_000160_350 Hb_000160_350 Hb_005965_030--Hb_000160_350 Hb_002157_260 Hb_002157_260 Hb_005965_030--Hb_002157_260 Hb_004785_100 Hb_004785_100 Hb_005965_030--Hb_004785_100 Hb_000679_340 Hb_000679_340 Hb_005965_030--Hb_000679_340 Hb_003638_090 Hb_003638_090 Hb_005965_030--Hb_003638_090 Hb_022256_060 Hb_022256_060 Hb_005965_030--Hb_022256_060 Hb_000922_020--Hb_001405_190 Hb_005288_080 Hb_005288_080 Hb_000922_020--Hb_005288_080 Hb_000922_020--Hb_000679_340 Hb_000922_020--Hb_022256_060 Hb_032202_080 Hb_032202_080 Hb_000922_020--Hb_032202_080 Hb_001077_030 Hb_001077_030 Hb_000922_020--Hb_001077_030 Hb_007044_110 Hb_007044_110 Hb_001636_050--Hb_007044_110 Hb_002067_030 Hb_002067_030 Hb_001636_050--Hb_002067_030 Hb_004976_010 Hb_004976_010 Hb_001636_050--Hb_004976_010 Hb_000645_170 Hb_000645_170 Hb_001636_050--Hb_000645_170 Hb_000236_470 Hb_000236_470 Hb_001636_050--Hb_000236_470 Hb_055235_020 Hb_055235_020 Hb_001636_050--Hb_055235_020 Hb_001804_110 Hb_001804_110 Hb_010998_040--Hb_001804_110 Hb_000959_230 Hb_000959_230 Hb_010998_040--Hb_000959_230 Hb_010362_030 Hb_010362_030 Hb_010998_040--Hb_010362_030 Hb_000139_190 Hb_000139_190 Hb_010998_040--Hb_000139_190 Hb_000130_420 Hb_000130_420 Hb_010998_040--Hb_000130_420 Hb_132840_010 Hb_132840_010 Hb_002027_060--Hb_132840_010 Hb_002701_150 Hb_002701_150 Hb_002027_060--Hb_002701_150 Hb_001821_160 Hb_001821_160 Hb_002027_060--Hb_001821_160 Hb_002027_060--Hb_001636_050 Hb_013394_030 Hb_013394_030 Hb_002027_060--Hb_013394_030 Hb_000402_120 Hb_000402_120 Hb_002027_060--Hb_000402_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.4083 33.5755 35.7594 17.1883 48.1352 21.0741
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.298 14.9256 13.0458 18.1873 17.9516

CAGE analysis