Hb_001953_010

Information

Type -
Description -
Location Contig1953: 33800-36229
Sequence    

Annotation

kegg
ID rcu:RCOM_1504900
description hypothetical protein
nr
ID XP_012090633.1
description PREDICTED: bidirectional sugar transporter SWEET10-like [Jatropha curcas]
swissprot
ID Q9LUE3
description Bidirectional sugar transporter SWEET10 OS=Arabidopsis thaliana GN=SWEET10 PE=2 SV=1
trembl
ID A0A067JIB7
description Sugar transporter SWEET OS=Jatropha curcas GN=JCGZ_26404 PE=3 SV=1
Gene Ontology
ID GO:0016021
description bidirectional sugar transporter sweet10-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19554: 33755-35249
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001953_010 0.0 - - PREDICTED: bidirectional sugar transporter SWEET10-like [Jatropha curcas]
2 Hb_004474_070 0.0547942157 desease resistance Gene Name: NB-ARC Disease resistance protein RPP8, putative [Ricinus communis]
3 Hb_000000_320 0.061896257 - - PREDICTED: calcium uniporter protein 4, mitochondrial [Jatropha curcas]
4 Hb_002804_070 0.0625728429 - - hypothetical protein JCGZ_05701 [Jatropha curcas]
5 Hb_002303_050 0.0677545877 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor PTL-like [Populus euphratica]
6 Hb_001022_070 0.0810868773 - - cell wall invertase [Manihot esculenta]
7 Hb_128216_010 0.0830138514 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
8 Hb_000120_600 0.0853510251 - - PREDICTED: uncharacterized protein LOC105628582 [Jatropha curcas]
9 Hb_000139_390 0.0910475164 - - -
10 Hb_004112_070 0.0958129867 - - -
11 Hb_001675_350 0.0978035797 - - Avr9/Cf-9 rapidly elicited protein [Jatropha curcas]
12 Hb_005946_200 0.0986891551 - - hypothetical protein POPTR_0006s16210g [Populus trichocarpa]
13 Hb_001856_130 0.1012240297 - - hypothetical protein CISIN_1g022795mg [Citrus sinensis]
14 Hb_004374_170 0.1034326042 - - PREDICTED: gibberellin 20 oxidase 1-B [Jatropha curcas]
15 Hb_000120_560 0.1036368138 - - protein with unknown function [Ricinus communis]
16 Hb_003023_030 0.1051059205 - - PREDICTED: MATE efflux family protein 5-like isoform X1 [Citrus sinensis]
17 Hb_003427_020 0.1093869163 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X1 [Jatropha curcas]
18 Hb_001221_050 0.1104349806 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Jatropha curcas]
19 Hb_005111_020 0.1183577016 - - hypothetical protein CISIN_1g0417821mg, partial [Citrus sinensis]
20 Hb_006951_010 0.1251265039 - - PREDICTED: ubiquitin-conjugating enzyme E2 10-like [Populus euphratica]

Gene co-expression network

sample Hb_001953_010 Hb_001953_010 Hb_004474_070 Hb_004474_070 Hb_001953_010--Hb_004474_070 Hb_000000_320 Hb_000000_320 Hb_001953_010--Hb_000000_320 Hb_002804_070 Hb_002804_070 Hb_001953_010--Hb_002804_070 Hb_002303_050 Hb_002303_050 Hb_001953_010--Hb_002303_050 Hb_001022_070 Hb_001022_070 Hb_001953_010--Hb_001022_070 Hb_128216_010 Hb_128216_010 Hb_001953_010--Hb_128216_010 Hb_004474_070--Hb_002303_050 Hb_004474_070--Hb_128216_010 Hb_001675_350 Hb_001675_350 Hb_004474_070--Hb_001675_350 Hb_004474_070--Hb_002804_070 Hb_000139_390 Hb_000139_390 Hb_004474_070--Hb_000139_390 Hb_004112_070 Hb_004112_070 Hb_000000_320--Hb_004112_070 Hb_005111_020 Hb_005111_020 Hb_000000_320--Hb_005111_020 Hb_000000_320--Hb_001022_070 Hb_003427_020 Hb_003427_020 Hb_000000_320--Hb_003427_020 Hb_000000_320--Hb_004474_070 Hb_004374_170 Hb_004374_170 Hb_002804_070--Hb_004374_170 Hb_005946_200 Hb_005946_200 Hb_002804_070--Hb_005946_200 Hb_000120_600 Hb_000120_600 Hb_002804_070--Hb_000120_600 Hb_002804_070--Hb_002303_050 Hb_002303_050--Hb_005946_200 Hb_002303_050--Hb_001675_350 Hb_002303_050--Hb_128216_010 Hb_001022_070--Hb_003427_020 Hb_001022_070--Hb_004474_070 Hb_001022_070--Hb_002303_050 Hb_001022_070--Hb_005946_200 Hb_002170_010 Hb_002170_010 Hb_128216_010--Hb_002170_010 Hb_112145_010 Hb_112145_010 Hb_128216_010--Hb_112145_010 Hb_128216_010--Hb_002804_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 11.0441 8.69775 27.2485 0.0249089 0.0938162
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.154965 3.88034

CAGE analysis