Hb_001953_070

Information

Type -
Description -
Location Contig1953: 83471-89481
Sequence    

Annotation

kegg
ID rcu:RCOM_1504920
description ribosomal pseudouridine synthase, putative (EC:3.2.1.17)
nr
ID XP_012090639.1
description PREDICTED: RNA pseudouridine synthase 7 isoform X2 [Jatropha curcas]
swissprot
ID P75485
description Uncharacterized RNA pseudouridine synthase MG209 homolog OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129) GN=MPN_292 PE=3 SV=1
trembl
ID A0A067JRF5
description Pseudouridine synthase OS=Jatropha curcas GN=JCGZ_26406 PE=3 SV=1
Gene Ontology
ID GO:0003723
description rna pseudouridine synthase 7 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001953_070 0.0 - - PREDICTED: RNA pseudouridine synthase 7 isoform X2 [Jatropha curcas]
2 Hb_002542_040 0.0707128269 - - hypothetical protein JCGZ_13884 [Jatropha curcas]
3 Hb_000010_110 0.0722281824 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Jatropha curcas]
4 Hb_001671_040 0.0829006703 - - PREDICTED: serine/arginine-rich splicing factor RS31-like isoform X1 [Populus euphratica]
5 Hb_000144_070 0.0870530123 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003213_010 0.0911193304 - - PREDICTED: uncharacterized protein LOC105641815 [Jatropha curcas]
7 Hb_002820_030 0.0925809778 - - PREDICTED: uncharacterized protein LOC105638922 [Jatropha curcas]
8 Hb_002163_050 0.0938040401 - - hypothetical protein POPTR_0014s15490g [Populus trichocarpa]
9 Hb_000035_250 0.0948974449 - - PREDICTED: uncharacterized protein LOC105637544 [Jatropha curcas]
10 Hb_001776_060 0.0960327643 - - PREDICTED: methyl-CpG-binding domain-containing protein 5-like [Jatropha curcas]
11 Hb_012340_090 0.097201676 - - PREDICTED: endonuclease III homolog 1, chloroplastic isoform X1 [Populus euphratica]
12 Hb_002217_110 0.0976005869 - - PREDICTED: craniofacial development protein 1 [Jatropha curcas]
13 Hb_001025_090 0.0978687866 - - PREDICTED: FKBP12-interacting protein of 37 kDa [Jatropha curcas]
14 Hb_001723_150 0.0993696412 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
15 Hb_000789_320 0.0996865258 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
16 Hb_000173_310 0.100223595 - - PREDICTED: uncharacterized protein LOC105631893 isoform X1 [Jatropha curcas]
17 Hb_004648_090 0.100945832 - - peroxisomal biogenesis factor, putative [Ricinus communis]
18 Hb_006615_050 0.101414389 - - PREDICTED: uncharacterized protein LOC105640686 [Jatropha curcas]
19 Hb_000352_350 0.1019904244 - - PREDICTED: monothiol glutaredoxin-S7, chloroplastic [Jatropha curcas]
20 Hb_008225_090 0.1020736131 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001953_070 Hb_001953_070 Hb_002542_040 Hb_002542_040 Hb_001953_070--Hb_002542_040 Hb_000010_110 Hb_000010_110 Hb_001953_070--Hb_000010_110 Hb_001671_040 Hb_001671_040 Hb_001953_070--Hb_001671_040 Hb_000144_070 Hb_000144_070 Hb_001953_070--Hb_000144_070 Hb_003213_010 Hb_003213_010 Hb_001953_070--Hb_003213_010 Hb_002820_030 Hb_002820_030 Hb_001953_070--Hb_002820_030 Hb_007533_010 Hb_007533_010 Hb_002542_040--Hb_007533_010 Hb_002163_050 Hb_002163_050 Hb_002542_040--Hb_002163_050 Hb_002542_040--Hb_000010_110 Hb_001623_270 Hb_001623_270 Hb_002542_040--Hb_001623_270 Hb_012340_090 Hb_012340_090 Hb_002542_040--Hb_012340_090 Hb_002553_040 Hb_002553_040 Hb_000010_110--Hb_002553_040 Hb_003001_080 Hb_003001_080 Hb_000010_110--Hb_003001_080 Hb_000522_150 Hb_000522_150 Hb_000010_110--Hb_000522_150 Hb_005271_220 Hb_005271_220 Hb_000010_110--Hb_005271_220 Hb_002217_110 Hb_002217_110 Hb_000010_110--Hb_002217_110 Hb_000035_250 Hb_000035_250 Hb_001671_040--Hb_000035_250 Hb_006615_050 Hb_006615_050 Hb_001671_040--Hb_006615_050 Hb_004648_090 Hb_004648_090 Hb_001671_040--Hb_004648_090 Hb_008225_090 Hb_008225_090 Hb_001671_040--Hb_008225_090 Hb_001671_040--Hb_000010_110 Hb_001776_060 Hb_001776_060 Hb_000144_070--Hb_001776_060 Hb_013394_030 Hb_013394_030 Hb_000144_070--Hb_013394_030 Hb_000339_040 Hb_000339_040 Hb_000144_070--Hb_000339_040 Hb_000789_320 Hb_000789_320 Hb_000144_070--Hb_000789_320 Hb_012384_030 Hb_012384_030 Hb_000144_070--Hb_012384_030 Hb_000352_350 Hb_000352_350 Hb_000144_070--Hb_000352_350 Hb_000173_310 Hb_000173_310 Hb_003213_010--Hb_000173_310 Hb_001723_150 Hb_001723_150 Hb_003213_010--Hb_001723_150 Hb_000300_260 Hb_000300_260 Hb_003213_010--Hb_000300_260 Hb_000649_230 Hb_000649_230 Hb_003213_010--Hb_000649_230 Hb_004312_010 Hb_004312_010 Hb_003213_010--Hb_004312_010 Hb_002272_050 Hb_002272_050 Hb_003213_010--Hb_002272_050 Hb_000738_020 Hb_000738_020 Hb_002820_030--Hb_000738_020 Hb_011457_150 Hb_011457_150 Hb_002820_030--Hb_011457_150 Hb_012239_020 Hb_012239_020 Hb_002820_030--Hb_012239_020 Hb_000424_060 Hb_000424_060 Hb_002820_030--Hb_000424_060 Hb_002820_030--Hb_000010_110 Hb_000069_380 Hb_000069_380 Hb_002820_030--Hb_000069_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.75011 5.241 8.47287 3.61549 4.16116 2.25532
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.43584 6.06619 3.21102 3.2289 3.46254

CAGE analysis