Hb_001953_080

Information

Type -
Description -
Location Contig1953: 105274-107602
Sequence    

Annotation

kegg
ID pop:POPTR_0015s11340g
description POPTRDRAFT_776329; hypothetical protein
nr
ID AIU48349.1
description pseudouridine synthase family protein, partial [Manihot esculenta]
swissprot
ID Q0E0Y3
description RNA pseudouridine synthase 7 OS=Oryza sativa subsp. japonica GN=Os02g0512300 PE=2 SV=2
trembl
ID A0A097PJZ8
description Pseudouridine synthase (Fragment) OS=Manihot esculenta PE=2 SV=1
Gene Ontology
ID GO:0003723
description rna pseudouridine synthase 7 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001953_080 0.0 - - pseudouridine synthase family protein, partial [Manihot esculenta]
2 Hb_011249_020 0.1015874559 - - PREDICTED: putative clathrin assembly protein At5g35200 [Jatropha curcas]
3 Hb_003020_260 0.1055509781 - - PREDICTED: metal tolerance protein B [Jatropha curcas]
4 Hb_001307_030 0.1166410421 - - PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]
5 Hb_000297_120 0.1175633568 - - PREDICTED: sorting nexin 1 [Jatropha curcas]
6 Hb_025098_010 0.1254836172 - - PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X2 [Jatropha curcas]
7 Hb_000649_140 0.1258885104 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase setd3 isoform X1 [Jatropha curcas]
8 Hb_000946_110 0.1261686926 - - GTP cyclohydrolase I, putative [Ricinus communis]
9 Hb_008176_010 0.1302119598 - - PREDICTED: pentatricopeptide repeat-containing protein At4g20090 [Jatropha curcas]
10 Hb_158163_010 0.1317035979 - - protein binding protein, putative [Ricinus communis]
11 Hb_012022_050 0.1345636992 - - hypothetical protein EUGRSUZ_B02804 [Eucalyptus grandis]
12 Hb_002481_060 0.1347296319 - - PREDICTED: uncharacterized protein LOC105640851 [Jatropha curcas]
13 Hb_001006_020 0.1348637555 - - PREDICTED: WW domain-binding protein 4 [Jatropha curcas]
14 Hb_004935_060 0.1360002734 - - Uncharacterized protein isoform 2 [Theobroma cacao]
15 Hb_000406_130 0.1370250976 - - vesicle-associated membrane protein, putative [Ricinus communis]
16 Hb_005144_050 0.1375492223 - - PREDICTED: S-adenosylmethionine synthase 1 isoform X2 [Vitis vinifera]
17 Hb_006277_010 0.1384642846 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Gossypium raimondii]
18 Hb_000309_050 0.140040709 - - PREDICTED: CASP-like protein 4A1 isoform X1 [Jatropha curcas]
19 Hb_000525_090 0.140143434 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
20 Hb_007383_020 0.1402413405 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001953_080 Hb_001953_080 Hb_011249_020 Hb_011249_020 Hb_001953_080--Hb_011249_020 Hb_003020_260 Hb_003020_260 Hb_001953_080--Hb_003020_260 Hb_001307_030 Hb_001307_030 Hb_001953_080--Hb_001307_030 Hb_000297_120 Hb_000297_120 Hb_001953_080--Hb_000297_120 Hb_025098_010 Hb_025098_010 Hb_001953_080--Hb_025098_010 Hb_000649_140 Hb_000649_140 Hb_001953_080--Hb_000649_140 Hb_011249_020--Hb_001307_030 Hb_012244_010 Hb_012244_010 Hb_011249_020--Hb_012244_010 Hb_011249_020--Hb_000297_120 Hb_000240_030 Hb_000240_030 Hb_011249_020--Hb_000240_030 Hb_011249_020--Hb_000649_140 Hb_006683_070 Hb_006683_070 Hb_011249_020--Hb_006683_070 Hb_018272_020 Hb_018272_020 Hb_003020_260--Hb_018272_020 Hb_000289_110 Hb_000289_110 Hb_003020_260--Hb_000289_110 Hb_002014_030 Hb_002014_030 Hb_003020_260--Hb_002014_030 Hb_000107_150 Hb_000107_150 Hb_003020_260--Hb_000107_150 Hb_001366_180 Hb_001366_180 Hb_003020_260--Hb_001366_180 Hb_003020_260--Hb_025098_010 Hb_001307_030--Hb_025098_010 Hb_008566_030 Hb_008566_030 Hb_001307_030--Hb_008566_030 Hb_185255_010 Hb_185255_010 Hb_001307_030--Hb_185255_010 Hb_001307_030--Hb_000297_120 Hb_000329_210 Hb_000329_210 Hb_001307_030--Hb_000329_210 Hb_032920_070 Hb_032920_070 Hb_000297_120--Hb_032920_070 Hb_000185_220 Hb_000185_220 Hb_000297_120--Hb_000185_220 Hb_000297_120--Hb_006683_070 Hb_006059_010 Hb_006059_010 Hb_000297_120--Hb_006059_010 Hb_002660_170 Hb_002660_170 Hb_000297_120--Hb_002660_170 Hb_025098_010--Hb_185255_010 Hb_000310_090 Hb_000310_090 Hb_025098_010--Hb_000310_090 Hb_005144_050 Hb_005144_050 Hb_025098_010--Hb_005144_050 Hb_002289_080 Hb_002289_080 Hb_025098_010--Hb_002289_080 Hb_008841_020 Hb_008841_020 Hb_025098_010--Hb_008841_020 Hb_003106_100 Hb_003106_100 Hb_000649_140--Hb_003106_100 Hb_002876_020 Hb_002876_020 Hb_000649_140--Hb_002876_020 Hb_000700_040 Hb_000700_040 Hb_000649_140--Hb_000700_040 Hb_000649_140--Hb_001307_030 Hb_000428_060 Hb_000428_060 Hb_000649_140--Hb_000428_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.0366 1.0357 1.90162 7.75998 1.62791 3.95348
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.08653 6.36324 6.26055 6.33025 11.3329

CAGE analysis