Hb_001953_090

Information

Type -
Description -
Location Contig1953: 107616-111892
Sequence    

Annotation

kegg
ID pop:POPTR_0012s10490g
description POPTRDRAFT_834364; hypothetical protein
nr
ID XP_012090637.1
description PREDICTED: membrane-anchored ubiquitin-fold protein 3 [Jatropha curcas]
swissprot
ID Q9SW27
description Membrane-anchored ubiquitin-fold protein 3 OS=Arabidopsis thaliana GN=MUB3 PE=1 SV=1
trembl
ID B9I3W3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s10490g PE=4 SV=1
Gene Ontology
ID GO:0005515
description membrane-anchored ubiquitin-fold protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19564: 107861-111820
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001953_090 0.0 - - PREDICTED: membrane-anchored ubiquitin-fold protein 3 [Jatropha curcas]
2 Hb_002878_010 0.0711589586 - - -
3 Hb_000042_200 0.0827222374 - - PREDICTED: uncharacterized protein LOC100252136 isoform X1 [Vitis vinifera]
4 Hb_002918_290 0.0841949748 - - PREDICTED: uncharacterized protein LOC105649583 isoform X1 [Jatropha curcas]
5 Hb_000322_140 0.0920948498 - - hypothetical protein RCOM_1047200 [Ricinus communis]
6 Hb_001842_040 0.0954972372 - - PREDICTED: uncharacterized protein LOC100800807 isoform X2 [Glycine max]
7 Hb_001284_030 0.0986228477 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
8 Hb_068056_030 0.0988191269 - - ATP synthase epsilon chain, mitochondrial, putative [Ricinus communis]
9 Hb_000441_190 0.1018045384 - - PREDICTED: GDP-L-galactose phosphorylase 1-like isoform X2 [Vitis vinifera]
10 Hb_001461_010 0.1041703747 - - PREDICTED: trafficking protein particle complex subunit 5 [Pyrus x bretschneideri]
11 Hb_001882_070 0.1060083924 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105634911 [Jatropha curcas]
12 Hb_002631_020 0.106299669 - - PREDICTED: protein FAM32A-like [Jatropha curcas]
13 Hb_006452_040 0.1070865876 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]
14 Hb_000272_140 0.1073874547 - - Protein bem46, putative [Ricinus communis]
15 Hb_000320_180 0.1075332104 - - PREDICTED: uncharacterized protein LOC105649315 [Jatropha curcas]
16 Hb_005278_020 0.110120579 - - PREDICTED: sorcin-like [Jatropha curcas]
17 Hb_004459_040 0.1112146983 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
18 Hb_000300_220 0.1124070068 - - PREDICTED: uncharacterized protein LOC105632569 [Jatropha curcas]
19 Hb_004374_140 0.1124336552 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]
20 Hb_033153_060 0.1144429606 - - Transcription elongation factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001953_090 Hb_001953_090 Hb_002878_010 Hb_002878_010 Hb_001953_090--Hb_002878_010 Hb_000042_200 Hb_000042_200 Hb_001953_090--Hb_000042_200 Hb_002918_290 Hb_002918_290 Hb_001953_090--Hb_002918_290 Hb_000322_140 Hb_000322_140 Hb_001953_090--Hb_000322_140 Hb_001842_040 Hb_001842_040 Hb_001953_090--Hb_001842_040 Hb_001284_030 Hb_001284_030 Hb_001953_090--Hb_001284_030 Hb_002878_010--Hb_000322_140 Hb_004336_050 Hb_004336_050 Hb_002878_010--Hb_004336_050 Hb_004374_140 Hb_004374_140 Hb_002878_010--Hb_004374_140 Hb_001461_010 Hb_001461_010 Hb_002878_010--Hb_001461_010 Hb_172706_030 Hb_172706_030 Hb_002878_010--Hb_172706_030 Hb_033153_060 Hb_033153_060 Hb_000042_200--Hb_033153_060 Hb_000042_200--Hb_002918_290 Hb_005463_140 Hb_005463_140 Hb_000042_200--Hb_005463_140 Hb_000042_200--Hb_001284_030 Hb_004459_040 Hb_004459_040 Hb_000042_200--Hb_004459_040 Hb_068056_030 Hb_068056_030 Hb_002918_290--Hb_068056_030 Hb_002918_290--Hb_001284_030 Hb_000224_140 Hb_000224_140 Hb_002918_290--Hb_000224_140 Hb_002918_290--Hb_033153_060 Hb_002918_290--Hb_004459_040 Hb_000300_220 Hb_000300_220 Hb_000322_140--Hb_000300_220 Hb_004659_060 Hb_004659_060 Hb_000322_140--Hb_004659_060 Hb_000322_140--Hb_001461_010 Hb_000322_140--Hb_004374_140 Hb_000441_190 Hb_000441_190 Hb_001842_040--Hb_000441_190 Hb_001842_040--Hb_001461_010 Hb_005278_020 Hb_005278_020 Hb_001842_040--Hb_005278_020 Hb_007100_030 Hb_007100_030 Hb_001842_040--Hb_007100_030 Hb_000283_110 Hb_000283_110 Hb_001842_040--Hb_000283_110 Hb_003893_050 Hb_003893_050 Hb_001842_040--Hb_003893_050 Hb_000046_350 Hb_000046_350 Hb_001284_030--Hb_000046_350 Hb_001284_030--Hb_033153_060 Hb_001284_030--Hb_068056_030 Hb_161175_010 Hb_161175_010 Hb_001284_030--Hb_161175_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.0167 4.05319 6.89725 24.9545 9.69474 16.9069
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.5348 51.1601 30.159 5.40697 16.6416

CAGE analysis