Hb_001953_120

Information

Type -
Description -
Location Contig1953: 122724-136070
Sequence    

Annotation

kegg
ID rcu:RCOM_1504950
description zinc finger protein, putative
nr
ID XP_012090643.1
description PREDICTED: uncharacterized protein LOC105648761 isoform X1 [Jatropha curcas]
swissprot
ID Q8BMD7
description MORC family CW-type zinc finger protein 4 OS=Mus musculus GN=Morc4 PE=2 SV=2
trembl
ID A0A067JSS2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26410 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19566: 122976-123306 , PASA_asmbl_19567: 123343-128792 , PASA_asmbl_19569: 134268-135831
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001953_120 0.0 - - PREDICTED: uncharacterized protein LOC105648761 isoform X1 [Jatropha curcas]
2 Hb_003142_040 0.0539545312 - - Sf3a3 [Gossypium arboreum]
3 Hb_002968_070 0.055244609 - - PREDICTED: transcription initiation factor TFIID subunit 4b isoform X2 [Jatropha curcas]
4 Hb_004223_160 0.0556900935 - - PREDICTED: 5'-3' exoribonuclease 3 isoform X2 [Jatropha curcas]
5 Hb_088144_020 0.0726497478 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 6-like isoform X1 [Jatropha curcas]
6 Hb_005832_010 0.0753040157 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
7 Hb_000934_210 0.0760626778 - - suppressor of ty, putative [Ricinus communis]
8 Hb_009476_090 0.076138265 - - PREDICTED: anaphase-promoting complex subunit 1 [Jatropha curcas]
9 Hb_001171_030 0.0762325854 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like [Jatropha curcas]
10 Hb_001221_180 0.0777095268 - - calcineurin-like phosphoesterase [Manihot esculenta]
11 Hb_000608_230 0.0797304687 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
12 Hb_002357_070 0.0803274199 transcription factor TF Family: PHD PREDICTED: protein strawberry notch homolog 1 [Jatropha curcas]
13 Hb_000377_050 0.0830130831 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
14 Hb_001951_170 0.0852744562 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
15 Hb_027472_220 0.0858736069 - - PREDICTED: nucleolar complex protein 3 homolog isoform X1 [Jatropha curcas]
16 Hb_002889_020 0.0869901393 - - PREDICTED: mitogen-activated protein kinase kinase 3 [Jatropha curcas]
17 Hb_003216_090 0.0881459911 - - PREDICTED: nuclear pore complex protein NUP133 isoform X1 [Jatropha curcas]
18 Hb_002016_090 0.0882356592 - - PREDICTED: DNA mismatch repair protein PMS1 [Jatropha curcas]
19 Hb_001221_090 0.0884285105 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
20 Hb_001673_050 0.0884440132 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001953_120 Hb_001953_120 Hb_003142_040 Hb_003142_040 Hb_001953_120--Hb_003142_040 Hb_002968_070 Hb_002968_070 Hb_001953_120--Hb_002968_070 Hb_004223_160 Hb_004223_160 Hb_001953_120--Hb_004223_160 Hb_088144_020 Hb_088144_020 Hb_001953_120--Hb_088144_020 Hb_005832_010 Hb_005832_010 Hb_001953_120--Hb_005832_010 Hb_000934_210 Hb_000934_210 Hb_001953_120--Hb_000934_210 Hb_003142_040--Hb_002968_070 Hb_001171_030 Hb_001171_030 Hb_003142_040--Hb_001171_030 Hb_001221_090 Hb_001221_090 Hb_003142_040--Hb_001221_090 Hb_000189_630 Hb_000189_630 Hb_003142_040--Hb_000189_630 Hb_001723_140 Hb_001723_140 Hb_003142_040--Hb_001723_140 Hb_002968_070--Hb_001171_030 Hb_002016_090 Hb_002016_090 Hb_002968_070--Hb_002016_090 Hb_000373_170 Hb_000373_170 Hb_002968_070--Hb_000373_170 Hb_000996_020 Hb_000996_020 Hb_002968_070--Hb_000996_020 Hb_004223_160--Hb_005832_010 Hb_001951_170 Hb_001951_170 Hb_004223_160--Hb_001951_170 Hb_009476_090 Hb_009476_090 Hb_004223_160--Hb_009476_090 Hb_001904_030 Hb_001904_030 Hb_004223_160--Hb_001904_030 Hb_004223_160--Hb_003142_040 Hb_088144_020--Hb_003142_040 Hb_088144_020--Hb_002968_070 Hb_000823_030 Hb_000823_030 Hb_088144_020--Hb_000823_030 Hb_001221_180 Hb_001221_180 Hb_088144_020--Hb_001221_180 Hb_088144_020--Hb_001171_030 Hb_005832_010--Hb_001904_030 Hb_005832_010--Hb_009476_090 Hb_002007_110 Hb_002007_110 Hb_005832_010--Hb_002007_110 Hb_005832_010--Hb_001951_170 Hb_000172_340 Hb_000172_340 Hb_005832_010--Hb_000172_340 Hb_027472_220 Hb_027472_220 Hb_000934_210--Hb_027472_220 Hb_012244_020 Hb_012244_020 Hb_000934_210--Hb_012244_020 Hb_123531_010 Hb_123531_010 Hb_000934_210--Hb_123531_010 Hb_000934_210--Hb_002007_110 Hb_002357_070 Hb_002357_070 Hb_000934_210--Hb_002357_070 Hb_000958_050 Hb_000958_050 Hb_000934_210--Hb_000958_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.91511 17.0734 9.83017 7.39257 8.42432 6.94245
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.17827 3.35081 4.20339 15.5406 12.5807

CAGE analysis