Hb_001953_150

Information

Type -
Description -
Location Contig1953: 160703-172636
Sequence    

Annotation

kegg
ID pop:POPTR_0015s11280g
description hypothetical protein
nr
ID XP_012090648.1
description PREDICTED: protein DEK isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JFG5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26413 PE=4 SV=1
Gene Ontology
ID GO:0003677
description protein dek isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19570: 160738-172518 , PASA_asmbl_19571: 171532-172086
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001953_150 0.0 - - PREDICTED: protein DEK isoform X2 [Jatropha curcas]
2 Hb_000922_140 0.0636965035 - - PREDICTED: peroxisomal membrane protein PEX14 [Jatropha curcas]
3 Hb_005332_020 0.0665901929 transcription factor TF Family: SNF2 dead box ATP-dependent RNA helicase, putative [Ricinus communis]
4 Hb_080147_040 0.0780886064 - - hypothetical protein JCGZ_07266 [Jatropha curcas]
5 Hb_001799_050 0.0790813844 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
6 Hb_001143_250 0.0808594392 - - PREDICTED: SWI/SNF complex subunit SWI3C isoform X1 [Jatropha curcas]
7 Hb_000270_460 0.0811828467 - - PREDICTED: anaphase-promoting complex subunit 8 [Jatropha curcas]
8 Hb_000300_360 0.083785581 - - PREDICTED: exosome component 10 [Jatropha curcas]
9 Hb_000359_120 0.0844696866 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003633_070 0.0850384867 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
11 Hb_140049_030 0.0873358964 - - non-specific lipid-transfer protein-like protein At2g13820 precursor [Jatropha curcas]
12 Hb_007982_070 0.0908217401 - - PREDICTED: protein CPR-5 [Jatropha curcas]
13 Hb_000317_060 0.0934815112 - - PREDICTED: uncharacterized protein LOC105647051 [Jatropha curcas]
14 Hb_000418_140 0.0944771349 - - PREDICTED: DNA damage-binding protein 1a [Jatropha curcas]
15 Hb_001545_200 0.0970034851 - - PREDICTED: uncharacterized oxidoreductase At4g09670 [Jatropha curcas]
16 Hb_007558_120 0.0970320982 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
17 Hb_002374_260 0.0971926845 - - PREDICTED: probable methyltransferase-like protein 15 [Jatropha curcas]
18 Hb_000162_030 0.0983457738 desease resistance Gene Name: RLI ABC transporter family protein [Hevea brasiliensis]
19 Hb_000640_310 0.098842722 - - hypothetical protein JCGZ_14055 [Jatropha curcas]
20 Hb_006658_040 0.0994739735 - - hypothetical protein POPTR_0006s19640g [Populus trichocarpa]

Gene co-expression network

sample Hb_001953_150 Hb_001953_150 Hb_000922_140 Hb_000922_140 Hb_001953_150--Hb_000922_140 Hb_005332_020 Hb_005332_020 Hb_001953_150--Hb_005332_020 Hb_080147_040 Hb_080147_040 Hb_001953_150--Hb_080147_040 Hb_001799_050 Hb_001799_050 Hb_001953_150--Hb_001799_050 Hb_001143_250 Hb_001143_250 Hb_001953_150--Hb_001143_250 Hb_000270_460 Hb_000270_460 Hb_001953_150--Hb_000270_460 Hb_000922_140--Hb_005332_020 Hb_006658_040 Hb_006658_040 Hb_000922_140--Hb_006658_040 Hb_004429_160 Hb_004429_160 Hb_000922_140--Hb_004429_160 Hb_001427_190 Hb_001427_190 Hb_000922_140--Hb_001427_190 Hb_001307_080 Hb_001307_080 Hb_000922_140--Hb_001307_080 Hb_002422_050 Hb_002422_050 Hb_005332_020--Hb_002422_050 Hb_008887_020 Hb_008887_020 Hb_005332_020--Hb_008887_020 Hb_000152_260 Hb_000152_260 Hb_005332_020--Hb_000152_260 Hb_005332_020--Hb_001143_250 Hb_002374_260 Hb_002374_260 Hb_005332_020--Hb_002374_260 Hb_000300_360 Hb_000300_360 Hb_080147_040--Hb_000300_360 Hb_009620_030 Hb_009620_030 Hb_080147_040--Hb_009620_030 Hb_006452_160 Hb_006452_160 Hb_080147_040--Hb_006452_160 Hb_005188_060 Hb_005188_060 Hb_080147_040--Hb_005188_060 Hb_140049_020 Hb_140049_020 Hb_080147_040--Hb_140049_020 Hb_000640_310 Hb_000640_310 Hb_001799_050--Hb_000640_310 Hb_003633_070 Hb_003633_070 Hb_001799_050--Hb_003633_070 Hb_000264_030 Hb_000264_030 Hb_001799_050--Hb_000264_030 Hb_000556_170 Hb_000556_170 Hb_001799_050--Hb_000556_170 Hb_000160_350 Hb_000160_350 Hb_001799_050--Hb_000160_350 Hb_001799_050--Hb_001143_250 Hb_000418_140 Hb_000418_140 Hb_001143_250--Hb_000418_140 Hb_001143_250--Hb_003633_070 Hb_002022_070 Hb_002022_070 Hb_001143_250--Hb_002022_070 Hb_007307_020 Hb_007307_020 Hb_001143_250--Hb_007307_020 Hb_027760_080 Hb_027760_080 Hb_001143_250--Hb_027760_080 Hb_007982_070 Hb_007982_070 Hb_000270_460--Hb_007982_070 Hb_001102_080 Hb_001102_080 Hb_000270_460--Hb_001102_080 Hb_000270_460--Hb_000300_360 Hb_001143_180 Hb_001143_180 Hb_000270_460--Hb_001143_180 Hb_002045_150 Hb_002045_150 Hb_000270_460--Hb_002045_150 Hb_007558_120 Hb_007558_120 Hb_000270_460--Hb_007558_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
71.1842 46.8861 44.0702 18.8345 45.846 46.8293
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.1572 16.1146 20.7125 39.2816 27.5393

CAGE analysis