Hb_001956_030

Information

Type -
Description -
Location Contig1956: 16892-18760
Sequence    

Annotation

kegg
ID pop:POPTR_0009s03770g
description POPTRDRAFT_875339; hypothetical protein
nr
ID XP_011042740.1
description PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Populus euphratica]
swissprot
ID Q8H038
description Xyloglucan galactosyltransferase KATAMARI1 homolog OS=Oryza sativa subsp. japonica GN=Os03g0144800 PE=2 SV=1
trembl
ID A0A067L1I3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02987 PE=4 SV=1
Gene Ontology
ID GO:0030048
description xyloglucan galactosyltransferase katamari1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001956_030 0.0 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Populus euphratica]
2 Hb_054362_010 0.1833055137 - - PREDICTED: uncharacterized protein LOC105650428 [Jatropha curcas]
3 Hb_127993_010 0.1884761208 - - PREDICTED: choline monooxygenase, chloroplastic isoform X4 [Jatropha curcas]
4 Hb_169574_010 0.206639946 - - PREDICTED: uncharacterized protein LOC104120373 [Nicotiana tomentosiformis]
5 Hb_089173_010 0.2066661749 - - PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]
6 Hb_048874_010 0.2078668761 - - hypothetical protein POPTR_0016s10870g [Populus trichocarpa]
7 Hb_005799_040 0.2109872105 - - PREDICTED: bidirectional sugar transporter SWEET4-like isoform X1 [Gossypium raimondii]
8 Hb_008246_050 0.211010653 - - -
9 Hb_096671_010 0.2256248197 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
10 Hb_000904_100 0.2269317249 - - hypothetical protein JCGZ_03883 [Jatropha curcas]
11 Hb_071586_010 0.2418642592 - - PREDICTED: uncharacterized protein LOC105632410 [Jatropha curcas]
12 Hb_001462_020 0.2423984565 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
13 Hb_162126_010 0.2486581535 - - -
14 Hb_008779_010 0.2510712057 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
15 Hb_005285_010 0.2581280994 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]
16 Hb_008643_010 0.2592260599 - - hypothetical protein JCGZ_04298 [Jatropha curcas]
17 Hb_000430_010 0.2619366951 - - -
18 Hb_018464_060 0.2728263898 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_125847_010 0.2735040544 - - -
20 Hb_006683_010 0.2870291846 - - cell wall invertase [Manihot esculenta]

Gene co-expression network

sample Hb_001956_030 Hb_001956_030 Hb_054362_010 Hb_054362_010 Hb_001956_030--Hb_054362_010 Hb_127993_010 Hb_127993_010 Hb_001956_030--Hb_127993_010 Hb_169574_010 Hb_169574_010 Hb_001956_030--Hb_169574_010 Hb_089173_010 Hb_089173_010 Hb_001956_030--Hb_089173_010 Hb_048874_010 Hb_048874_010 Hb_001956_030--Hb_048874_010 Hb_005799_040 Hb_005799_040 Hb_001956_030--Hb_005799_040 Hb_054362_010--Hb_127993_010 Hb_054362_010--Hb_169574_010 Hb_054362_010--Hb_048874_010 Hb_054362_010--Hb_005799_040 Hb_008246_050 Hb_008246_050 Hb_054362_010--Hb_008246_050 Hb_162126_010 Hb_162126_010 Hb_054362_010--Hb_162126_010 Hb_127993_010--Hb_169574_010 Hb_127993_010--Hb_048874_010 Hb_127993_010--Hb_005799_040 Hb_127993_010--Hb_008246_050 Hb_127993_010--Hb_162126_010 Hb_169574_010--Hb_048874_010 Hb_169574_010--Hb_005799_040 Hb_169574_010--Hb_008246_050 Hb_169574_010--Hb_162126_010 Hb_006806_010 Hb_006806_010 Hb_089173_010--Hb_006806_010 Hb_089173_010--Hb_008246_050 Hb_089173_010--Hb_005799_040 Hb_089173_010--Hb_048874_010 Hb_089173_010--Hb_169574_010 Hb_048874_010--Hb_005799_040 Hb_048874_010--Hb_008246_050 Hb_048874_010--Hb_162126_010 Hb_005799_040--Hb_008246_050 Hb_005799_040--Hb_162126_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0106243 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0724844 0.0838548 0

CAGE analysis