Hb_001956_040

Information

Type -
Description -
Location Contig1956: 19781-23854
Sequence    

Annotation

kegg
ID rcu:RCOM_0203230
description hypothetical protein
nr
ID XP_012067018.1
description PREDICTED: PGR5-like protein 1B, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q8GYC7
description PGR5-like protein 1B, chloroplastic OS=Arabidopsis thaliana GN=PGRL1B PE=1 SV=1
trembl
ID A0A067L1D2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02986 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19573: 23570-23794
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001956_040 0.0 - - PREDICTED: PGR5-like protein 1B, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_000958_130 0.0826953573 - - PREDICTED: uncharacterized protein LOC105628716 isoform X1 [Jatropha curcas]
3 Hb_003029_070 0.1057822634 - - PREDICTED: beta-carotene isomerase D27, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_005975_010 0.1060442272 - - [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase, putative [Ricinus communis]
5 Hb_003579_050 0.1117107399 - - PREDICTED: 14-3-3 protein 7 [Jatropha curcas]
6 Hb_002284_150 0.1151273215 - - PREDICTED: uncharacterized protein LOC105635198 [Jatropha curcas]
7 Hb_000300_180 0.1179919259 - - transcription initiation factor brf1, putative [Ricinus communis]
8 Hb_004128_200 0.1224023218 - - PREDICTED: uncharacterized protein LOC105642137 [Jatropha curcas]
9 Hb_002876_220 0.123015672 - - PREDICTED: uncharacterized protein LOC105633932 [Jatropha curcas]
10 Hb_029142_030 0.1248632057 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Hevea brasiliensis]
11 Hb_012725_070 0.1249991994 - - PREDICTED: uncharacterized protein LOC105636534 isoform X1 [Jatropha curcas]
12 Hb_001277_280 0.1253610172 - - PREDICTED: protein argonaute 10 [Jatropha curcas]
13 Hb_000390_310 0.1259482783 - - PREDICTED: uncharacterized protein LOC105632456 isoform X2 [Jatropha curcas]
14 Hb_007533_010 0.1263069705 transcription factor TF Family: bZIP G-box-binding factor, putative [Ricinus communis]
15 Hb_005288_150 0.1266135345 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]
16 Hb_005731_110 0.1272726863 - - PREDICTED: uncharacterized protein LOC105108367 isoform X1 [Populus euphratica]
17 Hb_000640_160 0.1281233183 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
18 Hb_002343_040 0.1282198418 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_000753_240 0.1286475203 - - PREDICTED: ADP,ATP carrier protein ER-ANT1 [Jatropha curcas]
20 Hb_007313_090 0.1291038046 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001956_040 Hb_001956_040 Hb_000958_130 Hb_000958_130 Hb_001956_040--Hb_000958_130 Hb_003029_070 Hb_003029_070 Hb_001956_040--Hb_003029_070 Hb_005975_010 Hb_005975_010 Hb_001956_040--Hb_005975_010 Hb_003579_050 Hb_003579_050 Hb_001956_040--Hb_003579_050 Hb_002284_150 Hb_002284_150 Hb_001956_040--Hb_002284_150 Hb_000300_180 Hb_000300_180 Hb_001956_040--Hb_000300_180 Hb_000836_430 Hb_000836_430 Hb_000958_130--Hb_000836_430 Hb_000958_130--Hb_003029_070 Hb_007101_160 Hb_007101_160 Hb_000958_130--Hb_007101_160 Hb_000390_310 Hb_000390_310 Hb_000958_130--Hb_000390_310 Hb_000753_240 Hb_000753_240 Hb_000958_130--Hb_000753_240 Hb_003029_070--Hb_000753_240 Hb_002876_220 Hb_002876_220 Hb_003029_070--Hb_002876_220 Hb_003029_070--Hb_000300_180 Hb_012022_150 Hb_012022_150 Hb_003029_070--Hb_012022_150 Hb_004970_190 Hb_004970_190 Hb_003029_070--Hb_004970_190 Hb_000804_040 Hb_000804_040 Hb_003029_070--Hb_000804_040 Hb_029142_030 Hb_029142_030 Hb_005975_010--Hb_029142_030 Hb_005975_010--Hb_003579_050 Hb_000002_120 Hb_000002_120 Hb_005975_010--Hb_000002_120 Hb_000340_130 Hb_000340_130 Hb_005975_010--Hb_000340_130 Hb_000224_150 Hb_000224_150 Hb_005975_010--Hb_000224_150 Hb_065755_030 Hb_065755_030 Hb_005975_010--Hb_065755_030 Hb_000260_680 Hb_000260_680 Hb_003579_050--Hb_000260_680 Hb_004128_200 Hb_004128_200 Hb_003579_050--Hb_004128_200 Hb_027073_030 Hb_027073_030 Hb_003579_050--Hb_027073_030 Hb_001776_060 Hb_001776_060 Hb_003579_050--Hb_001776_060 Hb_000107_030 Hb_000107_030 Hb_003579_050--Hb_000107_030 Hb_027472_120 Hb_027472_120 Hb_003579_050--Hb_027472_120 Hb_001517_050 Hb_001517_050 Hb_002284_150--Hb_001517_050 Hb_012340_090 Hb_012340_090 Hb_002284_150--Hb_012340_090 Hb_003213_010 Hb_003213_010 Hb_002284_150--Hb_003213_010 Hb_000300_260 Hb_000300_260 Hb_002284_150--Hb_000300_260 Hb_000649_230 Hb_000649_230 Hb_002284_150--Hb_000649_230 Hb_002946_190 Hb_002946_190 Hb_002284_150--Hb_002946_190 Hb_000757_030 Hb_000757_030 Hb_000300_180--Hb_000757_030 Hb_000640_160 Hb_000640_160 Hb_000300_180--Hb_000640_160 Hb_000300_180--Hb_002876_220 Hb_000190_030 Hb_000190_030 Hb_000300_180--Hb_000190_030 Hb_000304_070 Hb_000304_070 Hb_000300_180--Hb_000304_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.8193 9.46974 35.125 6.66485 18.4733 12.589
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.7326 13.2855 11.4435 5.76563 12.7934

CAGE analysis