Hb_001956_050

Information

Type -
Description -
Location Contig1956: 24510-29494
Sequence    

Annotation

kegg
ID tcc:TCM_041819
description Rab5-interacting family protein
nr
ID XP_012067020.1
description PREDICTED: uncharacterized protein C20orf24 homolog [Jatropha curcas]
swissprot
ID Q9CQT9
description Uncharacterized protein C20orf24 homolog OS=Mus musculus PE=2 SV=1
trembl
ID A0A0B0P7J3
description Uncharacterized protein OS=Gossypium arboreum GN=F383_00730 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19574: 24555-29470 , PASA_asmbl_19575: 26258-26544 , PASA_asmbl_19576: 26571-26820
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001956_050 0.0 - - PREDICTED: uncharacterized protein C20orf24 homolog [Jatropha curcas]
2 Hb_000714_020 0.101363222 - - PREDICTED: uncharacterized protein LOC105635336 [Jatropha curcas]
3 Hb_011930_010 0.1040140961 - - PREDICTED: outer envelope pore protein 24B, chloroplastic-like [Jatropha curcas]
4 Hb_011609_030 0.1065926767 - - conserved hypothetical protein 13 [Hevea brasiliensis]
5 Hb_004137_030 0.1135609299 - - conserved hypothetical protein [Ricinus communis]
6 Hb_007416_200 0.1138837491 - - PREDICTED: putative peptidyl-tRNA hydrolase PTRHD1 [Jatropha curcas]
7 Hb_003813_200 0.1168664804 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
8 Hb_001663_110 0.1205061682 - - RNA binding protein, putative [Ricinus communis]
9 Hb_002619_010 0.1207547116 - - -
10 Hb_005333_020 0.1212865786 - - PREDICTED: protein CutA, chloroplastic [Jatropha curcas]
11 Hb_073973_170 0.12200916 - - PREDICTED: uncharacterized protein LOC105638918 [Jatropha curcas]
12 Hb_002783_230 0.1229536826 - - neutral/alkaline invertase [Manihot esculenta]
13 Hb_001623_370 0.1260582333 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000590_090 0.1281225341 - - PREDICTED: sulfate transporter 4.1, chloroplastic-like isoform X1 [Jatropha curcas]
15 Hb_000768_050 0.1283504133 - - hypothetical protein RCOM_0845740 [Ricinus communis]
16 Hb_001673_120 0.1287327729 - - PREDICTED: uncharacterized protein LOC105635794 [Jatropha curcas]
17 Hb_001504_150 0.1294117501 - - PREDICTED: DCN1-like protein 4 [Jatropha curcas]
18 Hb_005147_110 0.1327945681 - - eukaryotic translation elongation factor 1B gamma-subunit [Hevea brasiliensis]
19 Hb_000976_270 0.1336034356 - - PREDICTED: uncharacterized protein LOC105646226 [Jatropha curcas]
20 Hb_019962_030 0.1341187643 - - PREDICTED: uncharacterized protein LOC105650622 [Jatropha curcas]

Gene co-expression network

sample Hb_001956_050 Hb_001956_050 Hb_000714_020 Hb_000714_020 Hb_001956_050--Hb_000714_020 Hb_011930_010 Hb_011930_010 Hb_001956_050--Hb_011930_010 Hb_011609_030 Hb_011609_030 Hb_001956_050--Hb_011609_030 Hb_004137_030 Hb_004137_030 Hb_001956_050--Hb_004137_030 Hb_007416_200 Hb_007416_200 Hb_001956_050--Hb_007416_200 Hb_003813_200 Hb_003813_200 Hb_001956_050--Hb_003813_200 Hb_000714_020--Hb_011609_030 Hb_001623_370 Hb_001623_370 Hb_000714_020--Hb_001623_370 Hb_001493_100 Hb_001493_100 Hb_000714_020--Hb_001493_100 Hb_001514_020 Hb_001514_020 Hb_000714_020--Hb_001514_020 Hb_002619_010 Hb_002619_010 Hb_000714_020--Hb_002619_010 Hb_004374_010 Hb_004374_010 Hb_000714_020--Hb_004374_010 Hb_005147_110 Hb_005147_110 Hb_011930_010--Hb_005147_110 Hb_024399_010 Hb_024399_010 Hb_011930_010--Hb_024399_010 Hb_011930_010--Hb_011609_030 Hb_160818_010 Hb_160818_010 Hb_011930_010--Hb_160818_010 Hb_011930_010--Hb_000714_020 Hb_005333_020 Hb_005333_020 Hb_011930_010--Hb_005333_020 Hb_004232_010 Hb_004232_010 Hb_011609_030--Hb_004232_010 Hb_011609_030--Hb_001623_370 Hb_005741_020 Hb_005741_020 Hb_011609_030--Hb_005741_020 Hb_001956_120 Hb_001956_120 Hb_011609_030--Hb_001956_120 Hb_073973_170 Hb_073973_170 Hb_004137_030--Hb_073973_170 Hb_004137_030--Hb_002619_010 Hb_004137_030--Hb_001623_370 Hb_004137_030--Hb_000714_020 Hb_004994_310 Hb_004994_310 Hb_004137_030--Hb_004994_310 Hb_007416_200--Hb_003813_200 Hb_000093_130 Hb_000093_130 Hb_007416_200--Hb_000093_130 Hb_000684_300 Hb_000684_300 Hb_007416_200--Hb_000684_300 Hb_007416_200--Hb_005333_020 Hb_006588_090 Hb_006588_090 Hb_007416_200--Hb_006588_090 Hb_003813_200--Hb_000093_130 Hb_000692_170 Hb_000692_170 Hb_003813_200--Hb_000692_170 Hb_000025_750 Hb_000025_750 Hb_003813_200--Hb_000025_750 Hb_003813_200--Hb_000684_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
204.898 45.7512 40.4813 15.5112 95.6832 89.9278
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
76.4982 65.0024 55.2114 14.8266 3.85988

CAGE analysis