Hb_001956_070

Information

Type -
Description -
Location Contig1956: 47143-53124
Sequence    

Annotation

kegg
ID rcu:RCOM_0352020
description hypothetical protein
nr
ID XP_012067015.1
description PREDICTED: telomere repeat-binding protein 2 isoform X2 [Jatropha curcas]
swissprot
ID Q6R0E3
description Telomere repeat-binding protein 5 OS=Arabidopsis thaliana GN=TRP5 PE=1 SV=2
trembl
ID A0A067L1I0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02982 PE=4 SV=1
Gene Ontology
ID GO:0042162
description telomere repeat-binding protein 5-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19580: 47168-53116 , PASA_asmbl_19581: 47159-50257
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001956_070 0.0 - - PREDICTED: telomere repeat-binding protein 2 isoform X2 [Jatropha curcas]
2 Hb_017987_060 0.0853428743 - - hypothetical protein JCGZ_15971 [Jatropha curcas]
3 Hb_000110_320 0.0950416738 - - PREDICTED: ceramide-1-phosphate transfer protein [Jatropha curcas]
4 Hb_003579_030 0.0956569902 - - phosphatase 2C family protein [Populus trichocarpa]
5 Hb_000141_020 0.1034703367 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 6 [Pyrus x bretschneideri]
6 Hb_001616_030 0.1049870529 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X2 [Jatropha curcas]
7 Hb_000125_030 0.1121301837 transcription factor TF Family: mTERF hypothetical protein PRUPE_ppa019510mg, partial [Prunus persica]
8 Hb_000069_700 0.116997745 - - hypothetical protein B456_005G003200 [Gossypium raimondii]
9 Hb_000563_250 0.1180387371 - - PREDICTED: uncharacterized protein LOC105643472 [Jatropha curcas]
10 Hb_001235_110 0.1180800991 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
11 Hb_003504_020 0.1186343781 - - PREDICTED: uncharacterized protein LOC105647732 [Jatropha curcas]
12 Hb_000802_100 0.120541606 - - PREDICTED: uncharacterized protein LOC105634009 [Jatropha curcas]
13 Hb_020301_040 0.1206154231 - - PREDICTED: mitochondrial substrate carrier family protein P [Jatropha curcas]
14 Hb_029866_060 0.1221994264 - - hypothetical protein PRUPE_ppa012628mg [Prunus persica]
15 Hb_002798_050 0.1236334325 - - l-allo-threonine aldolase, putative [Ricinus communis]
16 Hb_001172_120 0.1237439277 - - hypothetical protein B456_012G082000 [Gossypium raimondii]
17 Hb_000406_120 0.1240768173 - - acyl carrier protein 1, chloroplastic-like [Jatropha curcas]
18 Hb_010407_180 0.1254627606 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 1-like [Jatropha curcas]
19 Hb_021409_030 0.1293236818 - - PREDICTED: serine/threonine-protein kinase WNK8 isoform X3 [Jatropha curcas]
20 Hb_002454_030 0.1305303753 - - PREDICTED: mitochondrial substrate carrier family protein B [Jatropha curcas]

Gene co-expression network

sample Hb_001956_070 Hb_001956_070 Hb_017987_060 Hb_017987_060 Hb_001956_070--Hb_017987_060 Hb_000110_320 Hb_000110_320 Hb_001956_070--Hb_000110_320 Hb_003579_030 Hb_003579_030 Hb_001956_070--Hb_003579_030 Hb_000141_020 Hb_000141_020 Hb_001956_070--Hb_000141_020 Hb_001616_030 Hb_001616_030 Hb_001956_070--Hb_001616_030 Hb_000125_030 Hb_000125_030 Hb_001956_070--Hb_000125_030 Hb_017987_060--Hb_000141_020 Hb_000802_100 Hb_000802_100 Hb_017987_060--Hb_000802_100 Hb_003504_020 Hb_003504_020 Hb_017987_060--Hb_003504_020 Hb_017987_060--Hb_003579_030 Hb_000069_700 Hb_000069_700 Hb_017987_060--Hb_000069_700 Hb_000366_090 Hb_000366_090 Hb_000110_320--Hb_000366_090 Hb_000117_090 Hb_000117_090 Hb_000110_320--Hb_000117_090 Hb_168319_030 Hb_168319_030 Hb_000110_320--Hb_168319_030 Hb_000175_060 Hb_000175_060 Hb_000110_320--Hb_000175_060 Hb_011173_050 Hb_011173_050 Hb_000110_320--Hb_011173_050 Hb_002876_120 Hb_002876_120 Hb_003579_030--Hb_002876_120 Hb_002999_050 Hb_002999_050 Hb_003579_030--Hb_002999_050 Hb_002097_060 Hb_002097_060 Hb_003579_030--Hb_002097_060 Hb_020301_040 Hb_020301_040 Hb_003579_030--Hb_020301_040 Hb_003579_030--Hb_001616_030 Hb_001633_030 Hb_001633_030 Hb_003579_030--Hb_001633_030 Hb_000141_020--Hb_003504_020 Hb_000141_020--Hb_000125_030 Hb_000406_120 Hb_000406_120 Hb_000141_020--Hb_000406_120 Hb_000099_130 Hb_000099_130 Hb_000141_020--Hb_000099_130 Hb_001159_080 Hb_001159_080 Hb_000141_020--Hb_001159_080 Hb_000563_250 Hb_000563_250 Hb_001616_030--Hb_000563_250 Hb_000240_090 Hb_000240_090 Hb_001616_030--Hb_000240_090 Hb_003376_030 Hb_003376_030 Hb_001616_030--Hb_003376_030 Hb_001160_030 Hb_001160_030 Hb_001616_030--Hb_001160_030 Hb_153112_030 Hb_153112_030 Hb_001616_030--Hb_153112_030 Hb_000125_030--Hb_000406_120 Hb_002056_060 Hb_002056_060 Hb_000125_030--Hb_002056_060 Hb_003642_050 Hb_003642_050 Hb_000125_030--Hb_003642_050 Hb_000125_030--Hb_003504_020 Hb_010407_180 Hb_010407_180 Hb_000125_030--Hb_010407_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.8717 20.863 19.0919 9.21639 8.92044 12.5749
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
47.0114 70.4554 59.546 12.5055 7.93617

CAGE analysis