Hb_001956_160

Information

Type -
Description -
Location Contig1956: 120408-120656
Sequence    

Annotation

kegg
ID pxb:103930947
description uncharacterized LOC103930947
nr
ID XP_010107304.1
description hypothetical protein L484_009438 [Morus notabilis]
swissprot
ID -
description -
trembl
ID W9RWM9
description Uncharacterized protein OS=Morus notabilis GN=L484_009438 PE=4 SV=1
Gene Ontology
ID GO:0005515
description cyclin-dependent protein kinase inhibitor smr2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001956_160 0.0 - - hypothetical protein L484_009438 [Morus notabilis]
2 Hb_160576_010 0.1011740716 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
3 Hb_000032_230 0.1057754264 transcription factor TF Family: ERF hypothetical protein JCGZ_20463 [Jatropha curcas]
4 Hb_008948_110 0.1079248574 - - PREDICTED: peroxidase 25 [Jatropha curcas]
5 Hb_000060_100 0.1165250194 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
6 Hb_032260_100 0.1179675166 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]
7 Hb_002110_050 0.1194401115 - - conserved hypothetical protein [Ricinus communis]
8 Hb_029622_080 0.1214183495 transcription factor TF Family: AP2 hypothetical protein JCGZ_26299 [Jatropha curcas]
9 Hb_000656_350 0.1227222616 - - PREDICTED: linoleate 13S-lipoxygenase 3-1, chloroplastic [Jatropha curcas]
10 Hb_002218_080 0.124751815 - - Ankyrin repeat family protein, putative [Theobroma cacao]
11 Hb_001104_270 0.1311061019 - - hypothetical protein POPTR_0007s13980g [Populus trichocarpa]
12 Hb_000221_280 0.1335255994 - - PREDICTED: protein EXORDIUM-like [Populus euphratica]
13 Hb_004241_100 0.1357607555 - - PREDICTED: transcription factor bHLH123-like isoform X1 [Populus euphratica]
14 Hb_007441_150 0.1370569822 - - Ankyrin repeat family protein [Theobroma cacao]
15 Hb_002548_020 0.1370693819 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
16 Hb_001098_020 0.1375207186 - - PREDICTED: transcription factor bHLH123-like isoform X1 [Populus euphratica]
17 Hb_000925_110 0.1467065331 - - Spotted leaf protein, putative [Ricinus communis]
18 Hb_004112_050 0.1473528325 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
19 Hb_000529_050 0.1473737062 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
20 Hb_004945_050 0.1489141577 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0008s08740g [Populus trichocarpa]

Gene co-expression network

sample Hb_001956_160 Hb_001956_160 Hb_160576_010 Hb_160576_010 Hb_001956_160--Hb_160576_010 Hb_000032_230 Hb_000032_230 Hb_001956_160--Hb_000032_230 Hb_008948_110 Hb_008948_110 Hb_001956_160--Hb_008948_110 Hb_000060_100 Hb_000060_100 Hb_001956_160--Hb_000060_100 Hb_032260_100 Hb_032260_100 Hb_001956_160--Hb_032260_100 Hb_002110_050 Hb_002110_050 Hb_001956_160--Hb_002110_050 Hb_160576_010--Hb_000060_100 Hb_160576_010--Hb_002110_050 Hb_160576_010--Hb_000032_230 Hb_002218_080 Hb_002218_080 Hb_160576_010--Hb_002218_080 Hb_002548_020 Hb_002548_020 Hb_160576_010--Hb_002548_020 Hb_000780_110 Hb_000780_110 Hb_000032_230--Hb_000780_110 Hb_000032_230--Hb_002110_050 Hb_004241_100 Hb_004241_100 Hb_000032_230--Hb_004241_100 Hb_000032_230--Hb_002548_020 Hb_004112_050 Hb_004112_050 Hb_008948_110--Hb_004112_050 Hb_008948_110--Hb_002218_080 Hb_001310_080 Hb_001310_080 Hb_008948_110--Hb_001310_080 Hb_002234_200 Hb_002234_200 Hb_008948_110--Hb_002234_200 Hb_005694_150 Hb_005694_150 Hb_008948_110--Hb_005694_150 Hb_004945_050 Hb_004945_050 Hb_000060_100--Hb_004945_050 Hb_001104_270 Hb_001104_270 Hb_000060_100--Hb_001104_270 Hb_000060_100--Hb_002218_080 Hb_000060_100--Hb_002110_050 Hb_029622_080 Hb_029622_080 Hb_032260_100--Hb_029622_080 Hb_000656_350 Hb_000656_350 Hb_032260_100--Hb_000656_350 Hb_000529_050 Hb_000529_050 Hb_032260_100--Hb_000529_050 Hb_000808_090 Hb_000808_090 Hb_032260_100--Hb_000808_090 Hb_007441_150 Hb_007441_150 Hb_032260_100--Hb_007441_150 Hb_000571_030 Hb_000571_030 Hb_032260_100--Hb_000571_030 Hb_002110_050--Hb_002548_020 Hb_002110_050--Hb_002218_080 Hb_002110_050--Hb_004241_100 Hb_134022_010 Hb_134022_010 Hb_002110_050--Hb_134022_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.283069 244.739 76.41 84.7058 5.44701 0.289627
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.89021 28.7032

CAGE analysis