Hb_001956_190

Information

Type -
Description -
Location Contig1956: 153998-155152
Sequence    

Annotation

kegg
ID fve:101294151
description E3 ubiquitin-protein ligase RING1-like
nr
ID XP_012066982.1
description PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
swissprot
ID P0CH30
description E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1
trembl
ID A0A067L1F8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02957 PE=4 SV=1
Gene Ontology
ID GO:0005515
description e3 ubiquitin-protein ligase ring1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001956_190 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
2 Hb_111881_030 0.0965601073 - - PREDICTED: uncharacterized protein LOC105645255 [Jatropha curcas]
3 Hb_000003_430 0.1301688644 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
4 Hb_000506_130 0.134188176 - - DGCR14-related family protein [Populus trichocarpa]
5 Hb_000270_770 0.1365252283 - - PREDICTED: uncharacterized protein LOC105640410 [Jatropha curcas]
6 Hb_000336_190 0.1408729329 - - PREDICTED: UPF0481 protein At3g47200-like [Gossypium raimondii]
7 Hb_000003_760 0.1429288538 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA26-like [Jatropha curcas]
8 Hb_000220_090 0.1504622497 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Jatropha curcas]
9 Hb_002835_260 0.1512610348 - - PREDICTED: uncharacterized protein LOC105640313 [Jatropha curcas]
10 Hb_000015_180 0.1516427196 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
11 Hb_003913_030 0.1590678253 - - PREDICTED: uncharacterized protein LOC105640313 [Jatropha curcas]
12 Hb_011416_020 0.1607454247 - - conserved hypothetical protein [Ricinus communis]
13 Hb_009421_050 0.1738352604 - - PREDICTED: uncharacterized protein LOC105647037 [Jatropha curcas]
14 Hb_001511_190 0.1739958582 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
15 Hb_000245_270 0.1749310283 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
16 Hb_052113_020 0.17558565 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
17 Hb_011120_020 0.1784488212 - - PREDICTED: casein kinase I-like isoform X1 [Jatropha curcas]
18 Hb_000434_050 0.1799127037 transcription factor TF Family: ERF ethylene-responsive transcription factor 5 [Hevea brasiliensis]
19 Hb_006916_200 0.1824164647 - - hypothetical protein POPTR_0017s13190g, partial [Populus trichocarpa]
20 Hb_187697_010 0.1827073766 - - TMV resistance protein N, putative [Ricinus communis]

Gene co-expression network

sample Hb_001956_190 Hb_001956_190 Hb_111881_030 Hb_111881_030 Hb_001956_190--Hb_111881_030 Hb_000003_430 Hb_000003_430 Hb_001956_190--Hb_000003_430 Hb_000506_130 Hb_000506_130 Hb_001956_190--Hb_000506_130 Hb_000270_770 Hb_000270_770 Hb_001956_190--Hb_000270_770 Hb_000336_190 Hb_000336_190 Hb_001956_190--Hb_000336_190 Hb_000003_760 Hb_000003_760 Hb_001956_190--Hb_000003_760 Hb_111881_030--Hb_000003_430 Hb_111881_030--Hb_000003_760 Hb_111881_030--Hb_000506_130 Hb_052113_020 Hb_052113_020 Hb_111881_030--Hb_052113_020 Hb_008725_190 Hb_008725_190 Hb_111881_030--Hb_008725_190 Hb_000003_430--Hb_000270_770 Hb_011120_020 Hb_011120_020 Hb_000003_430--Hb_011120_020 Hb_187697_010 Hb_187697_010 Hb_000003_430--Hb_187697_010 Hb_011416_020 Hb_011416_020 Hb_000003_430--Hb_011416_020 Hb_000245_270 Hb_000245_270 Hb_000506_130--Hb_000245_270 Hb_000506_140 Hb_000506_140 Hb_000506_130--Hb_000506_140 Hb_000506_130--Hb_052113_020 Hb_017434_020 Hb_017434_020 Hb_000506_130--Hb_017434_020 Hb_029238_020 Hb_029238_020 Hb_000506_130--Hb_029238_020 Hb_004143_050 Hb_004143_050 Hb_000506_130--Hb_004143_050 Hb_103788_010 Hb_103788_010 Hb_000270_770--Hb_103788_010 Hb_185513_010 Hb_185513_010 Hb_000270_770--Hb_185513_010 Hb_006711_070 Hb_006711_070 Hb_000270_770--Hb_006711_070 Hb_003637_020 Hb_003637_020 Hb_000270_770--Hb_003637_020 Hb_178658_010 Hb_178658_010 Hb_000336_190--Hb_178658_010 Hb_000836_210 Hb_000836_210 Hb_000336_190--Hb_000836_210 Hb_000336_190--Hb_000003_760 Hb_002875_070 Hb_002875_070 Hb_000336_190--Hb_002875_070 Hb_002849_110 Hb_002849_110 Hb_000336_190--Hb_002849_110 Hb_001472_140 Hb_001472_140 Hb_000336_190--Hb_001472_140 Hb_001787_070 Hb_001787_070 Hb_000003_760--Hb_001787_070 Hb_009557_050 Hb_009557_050 Hb_000003_760--Hb_009557_050 Hb_000003_760--Hb_178658_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.1465 386.324 38.0339 172.676 10.5677 11.531
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.5283 27.765 19.5394 14.5594 15.662

CAGE analysis