Hb_001957_020

Information

Type -
Description -
Location Contig1957: 19005-20583
Sequence    

Annotation

kegg
ID egr:104450033
description probable glutathione S-transferase
nr
ID AEF79856.1
description glutathione-S-transferase tau 1 [Hevea brasiliensis]
swissprot
ID Q03666
description Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1
trembl
ID K9K1E4
description Glutathione-S-transferase tau 1 OS=Hevea brasiliensis GN=GSTU1 PE=2 SV=1
Gene Ontology
ID GO:0004364
description probable glutathione s-transferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19594: 18935-20572
cDNA
(Sanger)
(ID:Location)		 019_F09.ab1: 18985-20260 , 021_O14.ab1: 18985-20310 , 024_I15.ab1: 18980-20198 , 043_B06.ab1: 18980-20205 , 053_I17.ab1: 18978-20279

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001957_020 0.0 - - glutathione-S-transferase tau 1 [Hevea brasiliensis]
2 Hb_000212_230 0.0726874994 - - PREDICTED: endoribonuclease Dicer homolog 2 [Jatropha curcas]
3 Hb_000375_390 0.0771172217 - - poly-A binding protein, putative [Ricinus communis]
4 Hb_000347_430 0.0779581223 - - PREDICTED: mitochondrial ubiquitin ligase activator of nfkb 1-A [Jatropha curcas]
5 Hb_000016_210 0.0862921329 - - PREDICTED: post-GPI attachment to proteins factor 3 [Jatropha curcas]
6 Hb_000304_070 0.0866705751 - - non-canonical ubiquitin conjugating enzyme, putative [Ricinus communis]
7 Hb_010863_050 0.0880673417 - - OTU domain-containing protein 6B, putative [Ricinus communis]
8 Hb_000023_260 0.088867836 - - PREDICTED: monogalactosyldiacylglycerol synthase, chloroplastic [Jatropha curcas]
9 Hb_002205_030 0.0915950095 - - PREDICTED: alpha-galactosidase 3 [Jatropha curcas]
10 Hb_000363_310 0.0923934732 - - DNA topoisomerase type I, putative [Ricinus communis]
11 Hb_032202_220 0.092498049 - - ring finger protein, putative [Ricinus communis]
12 Hb_002811_270 0.0957153205 - - PREDICTED: peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase [Jatropha curcas]
13 Hb_006189_020 0.0958030023 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
14 Hb_000035_090 0.0963244504 - - PREDICTED: stromal cell-derived factor 2-like protein [Jatropha curcas]
15 Hb_002217_250 0.0971433777 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003626_070 0.0976817704 - - PREDICTED: golgin candidate 1 [Jatropha curcas]
17 Hb_000665_120 0.0982178205 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105637593 [Jatropha curcas]
18 Hb_000230_400 0.0982759929 - - PREDICTED: protein ABCI12, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_000212_440 0.0983913425 - - PREDICTED: riboflavin biosynthesis protein PYRR, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_028487_070 0.0984318616 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001957_020 Hb_001957_020 Hb_000212_230 Hb_000212_230 Hb_001957_020--Hb_000212_230 Hb_000375_390 Hb_000375_390 Hb_001957_020--Hb_000375_390 Hb_000347_430 Hb_000347_430 Hb_001957_020--Hb_000347_430 Hb_000016_210 Hb_000016_210 Hb_001957_020--Hb_000016_210 Hb_000304_070 Hb_000304_070 Hb_001957_020--Hb_000304_070 Hb_010863_050 Hb_010863_050 Hb_001957_020--Hb_010863_050 Hb_003581_200 Hb_003581_200 Hb_000212_230--Hb_003581_200 Hb_000212_230--Hb_000016_210 Hb_005588_080 Hb_005588_080 Hb_000212_230--Hb_005588_080 Hb_006913_020 Hb_006913_020 Hb_000212_230--Hb_006913_020 Hb_000212_230--Hb_010863_050 Hb_000521_250 Hb_000521_250 Hb_000212_230--Hb_000521_250 Hb_000023_260 Hb_000023_260 Hb_000375_390--Hb_000023_260 Hb_000061_180 Hb_000061_180 Hb_000375_390--Hb_000061_180 Hb_000035_090 Hb_000035_090 Hb_000375_390--Hb_000035_090 Hb_000230_400 Hb_000230_400 Hb_000375_390--Hb_000230_400 Hb_000375_390--Hb_000347_430 Hb_021374_030 Hb_021374_030 Hb_000375_390--Hb_021374_030 Hb_000406_200 Hb_000406_200 Hb_000347_430--Hb_000406_200 Hb_000363_310 Hb_000363_310 Hb_000347_430--Hb_000363_310 Hb_000138_100 Hb_000138_100 Hb_000347_430--Hb_000138_100 Hb_000258_070 Hb_000258_070 Hb_000347_430--Hb_000258_070 Hb_003517_040 Hb_003517_040 Hb_000347_430--Hb_003517_040 Hb_001021_150 Hb_001021_150 Hb_000347_430--Hb_001021_150 Hb_000016_210--Hb_003581_200 Hb_000139_080 Hb_000139_080 Hb_000016_210--Hb_000139_080 Hb_001699_220 Hb_001699_220 Hb_000016_210--Hb_001699_220 Hb_002006_150 Hb_002006_150 Hb_000016_210--Hb_002006_150 Hb_000304_070--Hb_010863_050 Hb_001623_270 Hb_001623_270 Hb_000304_070--Hb_001623_270 Hb_001824_080 Hb_001824_080 Hb_000304_070--Hb_001824_080 Hb_000304_070--Hb_005588_080 Hb_000254_100 Hb_000254_100 Hb_000304_070--Hb_000254_100 Hb_000207_300 Hb_000207_300 Hb_000304_070--Hb_000207_300 Hb_012150_030 Hb_012150_030 Hb_010863_050--Hb_012150_030 Hb_004452_120 Hb_004452_120 Hb_010863_050--Hb_004452_120 Hb_002675_250 Hb_002675_250 Hb_010863_050--Hb_002675_250 Hb_035273_020 Hb_035273_020 Hb_010863_050--Hb_035273_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
211.416 336.71 507.678 441.593 421.843 246.577
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
427.556 262.288 254.476 321.352 578.97

CAGE analysis