Hb_001957_050

Information

Type -
Description -
Location Contig1957: 84700-86055
Sequence    

Annotation

kegg
ID pop:POPTR_0001s34060g
description POPTRDRAFT_549673; hypothetical protein
nr
ID XP_012070652.1
description PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
swissprot
ID Q9SD53
description UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=2 SV=1
trembl
ID B9GJR4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s34060g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001957_050 0.0 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
2 Hb_002869_040 0.0909172621 - - PREDICTED: metal tolerance protein 4 [Jatropha curcas]
3 Hb_006590_030 0.0952166022 - - unknown [Populus trichocarpa]
4 Hb_005040_010 0.0960659693 - - hypothetical protein RCOM_1110360 [Ricinus communis]
5 Hb_000167_090 0.100175663 - - conserved hypothetical protein [Ricinus communis]
6 Hb_039410_010 0.1034816651 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
7 Hb_002420_030 0.1047179977 - - Disease resistance protein RPS5, putative [Ricinus communis]
8 Hb_004458_010 0.1048023278 - - PREDICTED: RING-H2 finger protein ATL78-like [Jatropha curcas]
9 Hb_001414_120 0.1072323024 - - Benzoate carboxyl methyltransferase, putative [Ricinus communis]
10 Hb_002422_010 0.1134344853 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
11 Hb_003012_010 0.128258094 - - conserved hypothetical protein [Ricinus communis]
12 Hb_009620_010 0.1284165431 transcription factor TF Family: Orphans conserved hypothetical protein [Ricinus communis]
13 Hb_002548_010 0.1299692368 - - hypothetical protein EUGRSUZ_L00530 [Eucalyptus grandis]
14 Hb_000304_040 0.1359907463 - - PREDICTED: nicotianamine synthase-like [Jatropha curcas]
15 Hb_165552_020 0.1362530966 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
16 Hb_000203_090 0.1390481565 - - hypothetical protein POPTR_0013s04080g [Populus trichocarpa]
17 Hb_010012_020 0.1468904595 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000769_050 0.1499035851 - - hypothetical protein CISIN_1g030637mg [Citrus sinensis]
19 Hb_043115_010 0.150050192 - - hypothetical protein JCGZ_16710 [Jatropha curcas]
20 Hb_003602_080 0.15226028 - - hypothetical protein POPTR_0002s10890g [Populus trichocarpa]

Gene co-expression network

sample Hb_001957_050 Hb_001957_050 Hb_002869_040 Hb_002869_040 Hb_001957_050--Hb_002869_040 Hb_006590_030 Hb_006590_030 Hb_001957_050--Hb_006590_030 Hb_005040_010 Hb_005040_010 Hb_001957_050--Hb_005040_010 Hb_000167_090 Hb_000167_090 Hb_001957_050--Hb_000167_090 Hb_039410_010 Hb_039410_010 Hb_001957_050--Hb_039410_010 Hb_002420_030 Hb_002420_030 Hb_001957_050--Hb_002420_030 Hb_002869_040--Hb_000167_090 Hb_003012_010 Hb_003012_010 Hb_002869_040--Hb_003012_010 Hb_002548_010 Hb_002548_010 Hb_002869_040--Hb_002548_010 Hb_002869_040--Hb_006590_030 Hb_000373_110 Hb_000373_110 Hb_002869_040--Hb_000373_110 Hb_006590_030--Hb_005040_010 Hb_000953_160 Hb_000953_160 Hb_006590_030--Hb_000953_160 Hb_003910_030 Hb_003910_030 Hb_006590_030--Hb_003910_030 Hb_061641_010 Hb_061641_010 Hb_006590_030--Hb_061641_010 Hb_004077_010 Hb_004077_010 Hb_006590_030--Hb_004077_010 Hb_169511_020 Hb_169511_020 Hb_006590_030--Hb_169511_020 Hb_165552_020 Hb_165552_020 Hb_005040_010--Hb_165552_020 Hb_011609_060 Hb_011609_060 Hb_005040_010--Hb_011609_060 Hb_005040_010--Hb_002420_030 Hb_005040_010--Hb_039410_010 Hb_000167_090--Hb_002548_010 Hb_000167_090--Hb_039410_010 Hb_000203_090 Hb_000203_090 Hb_000167_090--Hb_000203_090 Hb_002422_010 Hb_002422_010 Hb_000167_090--Hb_002422_010 Hb_001104_250 Hb_001104_250 Hb_000167_090--Hb_001104_250 Hb_000769_050 Hb_000769_050 Hb_000167_090--Hb_000769_050 Hb_039410_010--Hb_000203_090 Hb_039410_010--Hb_165552_020 Hb_003602_080 Hb_003602_080 Hb_039410_010--Hb_003602_080 Hb_002420_030--Hb_165552_020 Hb_010012_020 Hb_010012_020 Hb_002420_030--Hb_010012_020 Hb_003674_010 Hb_003674_010 Hb_002420_030--Hb_003674_010 Hb_002420_030--Hb_039410_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.69806 0.320543 4.1337 0.0607074 0.0292307
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis