Hb_001958_010

Information

Type -
Description -
Location Contig1958: 3691-4020
Sequence    

Annotation

kegg
ID cic:CICLE_v100078532m
description hypothetical protein
nr
ID XP_006453196.1
description hypothetical protein CICLE_v100078532mg, partial [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4UUX3
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v100078532mg PE=4 SV=1
Gene Ontology
ID GO:0016021
description protein nuclear fusion defective 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19597: 3935-11243
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001958_010 0.0 - - hypothetical protein CICLE_v100078532mg, partial [Citrus clementina]
2 Hb_000189_180 0.0283156381 - - PREDICTED: calmodulin-like protein 11 [Jatropha curcas]
3 Hb_004076_060 0.0483378681 - - PREDICTED: UDP-glycosyltransferase 82A1 [Jatropha curcas]
4 Hb_032572_010 0.0809991662 - - PREDICTED: phospholipase A2-alpha [Jatropha curcas]
5 Hb_005731_010 0.0820216246 - - hypothetical protein VITISV_030941 [Vitis vinifera]
6 Hb_000109_140 0.0851335059 - - hypothetical protein CICLE_v100314482mg, partial [Citrus clementina]
7 Hb_000941_110 0.0862334428 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
8 Hb_004037_040 0.0866799643 - - PREDICTED: putative glucose-6-phosphate 1-epimerase [Jatropha curcas]
9 Hb_127839_010 0.0952136203 - - hypothetical protein PRUPE_ppa000956mg [Prunus persica]
10 Hb_016333_010 0.0953314276 - - PREDICTED: probable terpene synthase 13 [Jatropha curcas]
11 Hb_111985_100 0.0995484788 - - beta-galactosidase, putative [Ricinus communis]
12 Hb_012655_010 0.1061560517 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
13 Hb_001514_030 0.1098397366 - - PREDICTED: cyclin-D3-3-like [Jatropha curcas]
14 Hb_001516_010 0.111834762 - - PREDICTED: guanylate kinase 2 [Jatropha curcas]
15 Hb_007632_070 0.1123555945 - - kinase, putative [Ricinus communis]
16 Hb_001079_060 0.1209522349 - - PREDICTED: probable vacuolar amino acid transporter YPQ1 isoform X1 [Jatropha curcas]
17 Hb_003894_170 0.1224618008 transcription factor TF Family: LOB hypothetical protein CICLE_v10021992mg [Citrus clementina]
18 Hb_017043_040 0.1240136324 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
19 Hb_009767_060 0.1268440629 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
20 Hb_051663_010 0.127909541 - - receptor-kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001958_010 Hb_001958_010 Hb_000189_180 Hb_000189_180 Hb_001958_010--Hb_000189_180 Hb_004076_060 Hb_004076_060 Hb_001958_010--Hb_004076_060 Hb_032572_010 Hb_032572_010 Hb_001958_010--Hb_032572_010 Hb_005731_010 Hb_005731_010 Hb_001958_010--Hb_005731_010 Hb_000109_140 Hb_000109_140 Hb_001958_010--Hb_000109_140 Hb_000941_110 Hb_000941_110 Hb_001958_010--Hb_000941_110 Hb_000189_180--Hb_004076_060 Hb_000189_180--Hb_000109_140 Hb_000189_180--Hb_005731_010 Hb_004037_040 Hb_004037_040 Hb_000189_180--Hb_004037_040 Hb_000189_180--Hb_032572_010 Hb_004076_060--Hb_005731_010 Hb_012655_010 Hb_012655_010 Hb_004076_060--Hb_012655_010 Hb_004076_060--Hb_000941_110 Hb_004076_060--Hb_000109_140 Hb_027506_030 Hb_027506_030 Hb_032572_010--Hb_027506_030 Hb_009767_060 Hb_009767_060 Hb_032572_010--Hb_009767_060 Hb_085962_010 Hb_085962_010 Hb_032572_010--Hb_085962_010 Hb_000303_060 Hb_000303_060 Hb_032572_010--Hb_000303_060 Hb_005731_010--Hb_012655_010 Hb_005731_010--Hb_000109_140 Hb_005731_010--Hb_000941_110 Hb_000109_140--Hb_012655_010 Hb_003894_170 Hb_003894_170 Hb_000109_140--Hb_003894_170 Hb_000941_110--Hb_012655_010 Hb_003911_050 Hb_003911_050 Hb_000941_110--Hb_003911_050 Hb_005018_010 Hb_005018_010 Hb_000941_110--Hb_005018_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.525451 0.585676 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.106082 0.380495

CAGE analysis