Hb_001958_060

Information

Type -
Description -
Location Contig1958: 54657-57251
Sequence    

Annotation

kegg
ID rcu:RCOM_1371740
description calcium ion binding protein, putative
nr
ID XP_012081235.1
description PREDICTED: calcium uptake protein 1, mitochondrial-like [Jatropha curcas]
swissprot
ID B1H2N3
description Calcium uptake protein 1, mitochondrial OS=Xenopus tropicalis GN=micu1 PE=2 SV=2
trembl
ID B9SZM7
description Calcium ion binding protein, putative OS=Ricinus communis GN=RCOM_1371740 PE=4 SV=1
Gene Ontology
ID GO:0005509
description calcium uptake protein mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19602: 54607-57697 , PASA_asmbl_19603: 54896-57549
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001958_060 0.0 - - PREDICTED: calcium uptake protein 1, mitochondrial-like [Jatropha curcas]
2 Hb_001292_030 0.0575429285 - - PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Jatropha curcas]
3 Hb_001277_350 0.0586991946 - - early light-induced protein, putative [Ricinus communis]
4 Hb_001975_100 0.0635511813 - - chlorophyll a-b binding protein 151, chloroplastic [Jatropha curcas]
5 Hb_005063_030 0.0644369244 - - Photosystem II reaction center W protein, chloroplast precursor, putative [Ricinus communis]
6 Hb_006570_030 0.0682239128 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
7 Hb_000230_420 0.070075148 - - GS [Hevea brasiliensis subsp. brasiliensis]
8 Hb_000139_310 0.0719161256 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic [Jatropha curcas]
9 Hb_001006_040 0.0741286748 - - PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic-like isoform X1 [Populus euphratica]
10 Hb_001416_130 0.0758493836 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000099_120 0.0767343088 - - PREDICTED: GDT1-like protein 1, chloroplastic isoform X3 [Jatropha curcas]
12 Hb_002785_030 0.0773477643 - - Polyketide cyclase/dehydrase and lipid transport superfamily protein [Theobroma cacao]
13 Hb_001564_120 0.0773961433 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP26-2, chloroplastic [Populus euphratica]
14 Hb_002368_060 0.0784023541 - - conserved hypothetical protein [Ricinus communis]
15 Hb_007044_270 0.0784323114 - - PREDICTED: uncharacterized protein LOC105638707 isoform X2 [Jatropha curcas]
16 Hb_000589_340 0.0788998599 - - unknown [Populus trichocarpa x Populus deltoides]
17 Hb_000254_130 0.0799621233 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
18 Hb_001028_040 0.0804094577 - - hypothetical protein POPTR_0018s09860g [Populus trichocarpa]
19 Hb_000531_100 0.0816694628 - - Photosystem I reaction center subunit III, chloroplast precursor, putative [Ricinus communis]
20 Hb_001766_160 0.0824046771 - - Serine/threonine-protein kinase SAPK1 [Gossypium arboreum]

Gene co-expression network

sample Hb_001958_060 Hb_001958_060 Hb_001292_030 Hb_001292_030 Hb_001958_060--Hb_001292_030 Hb_001277_350 Hb_001277_350 Hb_001958_060--Hb_001277_350 Hb_001975_100 Hb_001975_100 Hb_001958_060--Hb_001975_100 Hb_005063_030 Hb_005063_030 Hb_001958_060--Hb_005063_030 Hb_006570_030 Hb_006570_030 Hb_001958_060--Hb_006570_030 Hb_000230_420 Hb_000230_420 Hb_001958_060--Hb_000230_420 Hb_001006_040 Hb_001006_040 Hb_001292_030--Hb_001006_040 Hb_002785_030 Hb_002785_030 Hb_001292_030--Hb_002785_030 Hb_001322_120 Hb_001322_120 Hb_001292_030--Hb_001322_120 Hb_001292_030--Hb_000230_420 Hb_001292_030--Hb_006570_030 Hb_001292_030--Hb_001975_100 Hb_002534_020 Hb_002534_020 Hb_001277_350--Hb_002534_020 Hb_000497_050 Hb_000497_050 Hb_001277_350--Hb_000497_050 Hb_002752_020 Hb_002752_020 Hb_001277_350--Hb_002752_020 Hb_146255_030 Hb_146255_030 Hb_001277_350--Hb_146255_030 Hb_001277_350--Hb_001975_100 Hb_001975_100--Hb_005063_030 Hb_000254_130 Hb_000254_130 Hb_001975_100--Hb_000254_130 Hb_001975_100--Hb_001006_040 Hb_001564_120 Hb_001564_120 Hb_001975_100--Hb_001564_120 Hb_008225_050 Hb_008225_050 Hb_001975_100--Hb_008225_050 Hb_005063_030--Hb_001564_120 Hb_005063_030--Hb_000254_130 Hb_000101_330 Hb_000101_330 Hb_005063_030--Hb_000101_330 Hb_005063_030--Hb_001292_030 Hb_001999_230 Hb_001999_230 Hb_005063_030--Hb_001999_230 Hb_000139_310 Hb_000139_310 Hb_006570_030--Hb_000139_310 Hb_002368_060 Hb_002368_060 Hb_006570_030--Hb_002368_060 Hb_001028_040 Hb_001028_040 Hb_006570_030--Hb_001028_040 Hb_006570_030--Hb_001322_120 Hb_001416_130 Hb_001416_130 Hb_006570_030--Hb_001416_130 Hb_000531_100 Hb_000531_100 Hb_000230_420--Hb_000531_100 Hb_000230_420--Hb_002534_020 Hb_000083_180 Hb_000083_180 Hb_000230_420--Hb_000083_180 Hb_000230_420--Hb_001277_350 Hb_003038_060 Hb_003038_060 Hb_000230_420--Hb_003038_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.159628 2.0831 0.884327 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0300749 0.0236611 0 0.00944042 3.66796

CAGE analysis