Hb_001959_060

Information

Type -
Description -
Location Contig1959: 78658-87177
Sequence    

Annotation

kegg
ID vvi:100252881
description carboxyl-terminal-processing peptidase 2, chloroplastic
nr
ID XP_012077646.1
description PREDICTED: carboxyl-terminal-processing peptidase 2, chloroplastic [Jatropha curcas]
swissprot
ID O23614
description Carboxyl-terminal-processing peptidase 2, chloroplastic OS=Arabidopsis thaliana GN=CTPA2 PE=1 SV=1
trembl
ID A0A067KB45
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12901 PE=4 SV=1
Gene Ontology
ID GO:0005739
description carboxyl-terminal-processing protease

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19624: 78762-82667 , PASA_asmbl_19625: 82801-86877 , PASA_asmbl_19627: 86912-87201
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001959_060 0.0 - - PREDICTED: carboxyl-terminal-processing peptidase 2, chloroplastic [Jatropha curcas]
2 Hb_006829_080 0.0700277041 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
3 Hb_005618_080 0.0700560785 - - PREDICTED: protoporphyrinogen oxidase 1, chloroplastic [Jatropha curcas]
4 Hb_000684_430 0.0723177696 - - PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic [Jatropha curcas]
5 Hb_148146_010 0.0881846207 - - coproporphyrinogen III oxidase [Ziziphus jujuba]
6 Hb_189003_060 0.0895357521 - - PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_000402_020 0.0935072173 - - PREDICTED: 2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_172632_060 0.0961687674 - - PREDICTED: uncharacterized protein LOC105646135 isoform X1 [Jatropha curcas]
9 Hb_005116_100 0.0964414414 - - PREDICTED: uncharacterized protein LOC105649999 [Jatropha curcas]
10 Hb_004871_010 0.0965855821 - - RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
11 Hb_007426_170 0.0975445679 transcription factor TF Family: TCP -
12 Hb_000473_050 0.0976647263 - - chromatin regulatory protein sir2, putative [Ricinus communis]
13 Hb_000005_130 0.0993715934 - - hypothetical protein POPTR_0004s22660g [Populus trichocarpa]
14 Hb_009288_040 0.1028316638 - - PREDICTED: uncharacterized protein LOC105648677 [Jatropha curcas]
15 Hb_025194_090 0.1048926065 - - coproporphyrinogen III oxidase, putative [Ricinus communis]
16 Hb_000802_050 0.1062758848 transcription factor TF Family: TCP PREDICTED: transcription factor TCP2-like [Jatropha curcas]
17 Hb_002986_090 0.1063585616 - - PREDICTED: methionine aminopeptidase 1D, chloroplastic/mitochondrial [Jatropha curcas]
18 Hb_001649_030 0.1065386334 - - PREDICTED: peptide deformylase 1B, chloroplastic [Jatropha curcas]
19 Hb_002928_030 0.1068704289 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
20 Hb_000548_060 0.107781541 - - PREDICTED: fruit protein pKIWI502 [Jatropha curcas]

Gene co-expression network

sample Hb_001959_060 Hb_001959_060 Hb_006829_080 Hb_006829_080 Hb_001959_060--Hb_006829_080 Hb_005618_080 Hb_005618_080 Hb_001959_060--Hb_005618_080 Hb_000684_430 Hb_000684_430 Hb_001959_060--Hb_000684_430 Hb_148146_010 Hb_148146_010 Hb_001959_060--Hb_148146_010 Hb_189003_060 Hb_189003_060 Hb_001959_060--Hb_189003_060 Hb_000402_020 Hb_000402_020 Hb_001959_060--Hb_000402_020 Hb_000473_050 Hb_000473_050 Hb_006829_080--Hb_000473_050 Hb_006829_080--Hb_000684_430 Hb_002232_380 Hb_002232_380 Hb_006829_080--Hb_002232_380 Hb_004055_160 Hb_004055_160 Hb_006829_080--Hb_004055_160 Hb_000005_130 Hb_000005_130 Hb_006829_080--Hb_000005_130 Hb_005618_080--Hb_000402_020 Hb_005116_100 Hb_005116_100 Hb_005618_080--Hb_005116_100 Hb_000056_310 Hb_000056_310 Hb_005618_080--Hb_000056_310 Hb_005618_080--Hb_006829_080 Hb_172632_060 Hb_172632_060 Hb_005618_080--Hb_172632_060 Hb_000684_430--Hb_004055_160 Hb_002217_140 Hb_002217_140 Hb_000684_430--Hb_002217_140 Hb_000684_430--Hb_148146_010 Hb_002005_040 Hb_002005_040 Hb_000684_430--Hb_002005_040 Hb_148146_010--Hb_000056_310 Hb_148146_010--Hb_005116_100 Hb_004837_210 Hb_004837_210 Hb_148146_010--Hb_004837_210 Hb_002928_030 Hb_002928_030 Hb_148146_010--Hb_002928_030 Hb_189003_060--Hb_000473_050 Hb_005147_080 Hb_005147_080 Hb_189003_060--Hb_005147_080 Hb_002075_030 Hb_002075_030 Hb_189003_060--Hb_002075_030 Hb_189003_060--Hb_000684_430 Hb_000480_040 Hb_000480_040 Hb_189003_060--Hb_000480_040 Hb_000402_020--Hb_005116_100 Hb_003752_090 Hb_003752_090 Hb_000402_020--Hb_003752_090 Hb_000402_020--Hb_006829_080 Hb_000402_020--Hb_000056_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.46866 1.54166 9.63724 3.05986 1.31441 1.20829
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.28837 2.28074 1.15603 1.70832 10.8797

CAGE analysis