Hb_001959_080

Information

Type -
Description -
Location Contig1959: 90859-92251
Sequence    

Annotation

kegg
ID rcu:RCOM_1024100
description hypothetical protein
nr
ID XP_002518198.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9T0H2
description Small acidic protein 1 OS=Arabidopsis thaliana GN=SMAP1 PE=1 SV=1
trembl
ID B9RWS9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1024100 PE=4 SV=1
Gene Ontology
ID GO:0006661
description small acidic protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19629: 90820-91440
cDNA
(Sanger)
(ID:Location)		 012_G11.ab1: 90830-91201 , 022_M19.ab1: 90882-91239 , 035_K09.ab1: 90882-91239

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001959_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001488_330 0.0903670597 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
3 Hb_001862_190 0.0962999397 - - PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1 isoform X2 [Jatropha curcas]
4 Hb_003001_120 0.0983773819 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
5 Hb_000089_220 0.0987549177 - - PREDICTED: protein FAM133-like [Populus euphratica]
6 Hb_002968_060 0.0996564651 - - PREDICTED: uncharacterized protein LOC105638042 [Jatropha curcas]
7 Hb_006332_020 0.0999045374 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
8 Hb_006541_030 0.1010994403 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
9 Hb_012008_020 0.10168856 - - PREDICTED: uncharacterized protein LOC104233229 [Nicotiana sylvestris]
10 Hb_000398_180 0.1018118968 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
11 Hb_001019_230 0.102507615 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08070 [Jatropha curcas]
12 Hb_007380_070 0.1029668865 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
13 Hb_003929_160 0.1030348741 - - PREDICTED: pyruvate dehydrogenase (acetyl-transferring) kinase, mitochondrial [Jatropha curcas]
14 Hb_003376_040 0.1032799854 - - PREDICTED: uncharacterized protein LOC105642177 [Jatropha curcas]
15 Hb_006692_030 0.1046164075 - - PREDICTED: uncharacterized protein LOC105632913 [Jatropha curcas]
16 Hb_000204_040 0.1047326627 - - PREDICTED: polyadenylate-binding protein-interacting protein 6 [Jatropha curcas]
17 Hb_000230_200 0.105286965 - - PREDICTED: uncharacterized protein At4g15545 [Jatropha curcas]
18 Hb_000943_070 0.1053009958 - - PREDICTED: uncharacterized protein LOC105635592 isoform X1 [Jatropha curcas]
19 Hb_001828_140 0.1065904636 - - PREDICTED: uncharacterized protein LOC105633066 [Jatropha curcas]
20 Hb_002762_120 0.1067915165 - - PREDICTED: uncharacterized protein LOC105640350 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001959_080 Hb_001959_080 Hb_001488_330 Hb_001488_330 Hb_001959_080--Hb_001488_330 Hb_001862_190 Hb_001862_190 Hb_001959_080--Hb_001862_190 Hb_003001_120 Hb_003001_120 Hb_001959_080--Hb_003001_120 Hb_000089_220 Hb_000089_220 Hb_001959_080--Hb_000089_220 Hb_002968_060 Hb_002968_060 Hb_001959_080--Hb_002968_060 Hb_006332_020 Hb_006332_020 Hb_001959_080--Hb_006332_020 Hb_001488_330--Hb_006332_020 Hb_000977_070 Hb_000977_070 Hb_001488_330--Hb_000977_070 Hb_000022_250 Hb_000022_250 Hb_001488_330--Hb_000022_250 Hb_000554_020 Hb_000554_020 Hb_001488_330--Hb_000554_020 Hb_000032_290 Hb_000032_290 Hb_001488_330--Hb_000032_290 Hb_004600_040 Hb_004600_040 Hb_001488_330--Hb_004600_040 Hb_033153_050 Hb_033153_050 Hb_001862_190--Hb_033153_050 Hb_000134_090 Hb_000134_090 Hb_001862_190--Hb_000134_090 Hb_006922_100 Hb_006922_100 Hb_001862_190--Hb_006922_100 Hb_001322_190 Hb_001322_190 Hb_001862_190--Hb_001322_190 Hb_005662_030 Hb_005662_030 Hb_001862_190--Hb_005662_030 Hb_007477_080 Hb_007477_080 Hb_001862_190--Hb_007477_080 Hb_003929_160 Hb_003929_160 Hb_003001_120--Hb_003929_160 Hb_011689_080 Hb_011689_080 Hb_003001_120--Hb_011689_080 Hb_001936_080 Hb_001936_080 Hb_003001_120--Hb_001936_080 Hb_001269_680 Hb_001269_680 Hb_003001_120--Hb_001269_680 Hb_118707_030 Hb_118707_030 Hb_003001_120--Hb_118707_030 Hb_000230_200 Hb_000230_200 Hb_003001_120--Hb_000230_200 Hb_003406_010 Hb_003406_010 Hb_000089_220--Hb_003406_010 Hb_006185_050 Hb_006185_050 Hb_000089_220--Hb_006185_050 Hb_003642_060 Hb_003642_060 Hb_000089_220--Hb_003642_060 Hb_003001_140 Hb_003001_140 Hb_000089_220--Hb_003001_140 Hb_003010_030 Hb_003010_030 Hb_000089_220--Hb_003010_030 Hb_000926_280 Hb_000926_280 Hb_000089_220--Hb_000926_280 Hb_002968_060--Hb_000230_200 Hb_002007_060 Hb_002007_060 Hb_002968_060--Hb_002007_060 Hb_002968_060--Hb_003001_120 Hb_002968_060--Hb_001269_680 Hb_010661_030 Hb_010661_030 Hb_002968_060--Hb_010661_030 Hb_000103_560 Hb_000103_560 Hb_002968_060--Hb_000103_560 Hb_000398_180 Hb_000398_180 Hb_006332_020--Hb_000398_180 Hb_004195_160 Hb_004195_160 Hb_006332_020--Hb_004195_160 Hb_028872_140 Hb_028872_140 Hb_006332_020--Hb_028872_140 Hb_001571_040 Hb_001571_040 Hb_006332_020--Hb_001571_040 Hb_001226_160 Hb_001226_160 Hb_006332_020--Hb_001226_160 Hb_002876_110 Hb_002876_110 Hb_006332_020--Hb_002876_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
69.9934 22.3628 13.9783 24.8791 44.7852 77.1076
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
50.6655 62.6072 46.4374 11.4452 28.9263

CAGE analysis