Hb_001959_130

Information

Type -
Description -
Location Contig1959: 116653-118887
Sequence    

Annotation

kegg
ID rcu:RCOM_1024300
description transporter, putative
nr
ID XP_002518207.1
description transporter, putative [Ricinus communis]
swissprot
ID O22780
description Probable folate-biopterin transporter 9, chloroplastic OS=Arabidopsis thaliana GN=At2g33280 PE=3 SV=2
trembl
ID B9RWT8
description Transporter, putative OS=Ricinus communis GN=RCOM_1024300 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable folate-biopterin transporter chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19634: 116736-117060
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001959_130 0.0 - - transporter, putative [Ricinus communis]
2 Hb_000749_240 0.197817294 - - conserved hypothetical protein [Ricinus communis]
3 Hb_007943_190 0.1988331153 - - cytoplasmic dynein light chain, putative [Ricinus communis]
4 Hb_000920_370 0.1998450586 - - hypothetical protein JCGZ_24527 [Jatropha curcas]
5 Hb_002774_050 0.2020059138 - - PREDICTED: uncharacterized protein LOC105630601 [Jatropha curcas]
6 Hb_011909_110 0.2101063239 - - PREDICTED: uncharacterized protein LOC105633210 [Jatropha curcas]
7 Hb_000676_340 0.2101206936 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_010931_050 0.212599894 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25-like [Jatropha curcas]
9 Hb_000178_120 0.2129732683 - - PREDICTED: histone H2B [Jatropha curcas]
10 Hb_001158_190 0.2183249353 - - PREDICTED: bidirectional sugar transporter SWEET10-like [Jatropha curcas]
11 Hb_001635_020 0.2229924778 - - PREDICTED: inorganic pyrophosphatase 1-like [Jatropha curcas]
12 Hb_001096_030 0.2234956052 - - uridylate kinase plant, putative [Ricinus communis]
13 Hb_001348_120 0.223756881 - - Phloem protein 2-B10, putative [Theobroma cacao]
14 Hb_001232_140 0.2239045444 - - PREDICTED: uncharacterized protein LOC105634966 [Jatropha curcas]
15 Hb_002260_030 0.2254897043 - - PREDICTED: putative glutamine amidotransferase YLR126C [Jatropha curcas]
16 Hb_015430_010 0.2291464276 - - PREDICTED: uncharacterized protein LOC105125506 isoform X2 [Populus euphratica]
17 Hb_001504_140 0.2292522608 - - PREDICTED: deSI-like protein At4g17486 [Populus euphratica]
18 Hb_000099_130 0.2352189285 - - PREDICTED: uncharacterized protein LOC105645728 [Jatropha curcas]
19 Hb_005527_040 0.2376554175 - - PREDICTED: methionine adenosyltransferase 2 subunit beta [Jatropha curcas]
20 Hb_001357_120 0.2384332185 - - ubiquitin-activating enzyme E1, putative [Ricinus communis]

Gene co-expression network

sample Hb_001959_130 Hb_001959_130 Hb_000749_240 Hb_000749_240 Hb_001959_130--Hb_000749_240 Hb_007943_190 Hb_007943_190 Hb_001959_130--Hb_007943_190 Hb_000920_370 Hb_000920_370 Hb_001959_130--Hb_000920_370 Hb_002774_050 Hb_002774_050 Hb_001959_130--Hb_002774_050 Hb_011909_110 Hb_011909_110 Hb_001959_130--Hb_011909_110 Hb_000676_340 Hb_000676_340 Hb_001959_130--Hb_000676_340 Hb_009838_040 Hb_009838_040 Hb_000749_240--Hb_009838_040 Hb_017134_010 Hb_017134_010 Hb_000749_240--Hb_017134_010 Hb_000115_050 Hb_000115_050 Hb_000749_240--Hb_000115_050 Hb_005000_160 Hb_005000_160 Hb_000749_240--Hb_005000_160 Hb_001579_140 Hb_001579_140 Hb_000749_240--Hb_001579_140 Hb_001158_190 Hb_001158_190 Hb_000749_240--Hb_001158_190 Hb_027751_060 Hb_027751_060 Hb_007943_190--Hb_027751_060 Hb_005496_090 Hb_005496_090 Hb_007943_190--Hb_005496_090 Hb_083380_010 Hb_083380_010 Hb_007943_190--Hb_083380_010 Hb_012163_020 Hb_012163_020 Hb_007943_190--Hb_012163_020 Hb_023344_050 Hb_023344_050 Hb_007943_190--Hb_023344_050 Hb_025645_030 Hb_025645_030 Hb_007943_190--Hb_025645_030 Hb_007305_030 Hb_007305_030 Hb_000920_370--Hb_007305_030 Hb_001123_210 Hb_001123_210 Hb_000920_370--Hb_001123_210 Hb_000920_370--Hb_001158_190 Hb_001300_260 Hb_001300_260 Hb_000920_370--Hb_001300_260 Hb_001516_020 Hb_001516_020 Hb_000920_370--Hb_001516_020 Hb_050806_010 Hb_050806_010 Hb_002774_050--Hb_050806_010 Hb_007192_100 Hb_007192_100 Hb_002774_050--Hb_007192_100 Hb_001314_040 Hb_001314_040 Hb_002774_050--Hb_001314_040 Hb_000178_120 Hb_000178_120 Hb_002774_050--Hb_000178_120 Hb_001357_120 Hb_001357_120 Hb_002774_050--Hb_001357_120 Hb_010402_050 Hb_010402_050 Hb_002774_050--Hb_010402_050 Hb_015430_010 Hb_015430_010 Hb_011909_110--Hb_015430_010 Hb_002043_120 Hb_002043_120 Hb_011909_110--Hb_002043_120 Hb_000167_030 Hb_000167_030 Hb_011909_110--Hb_000167_030 Hb_000613_160 Hb_000613_160 Hb_011909_110--Hb_000613_160 Hb_008215_030 Hb_008215_030 Hb_011909_110--Hb_008215_030 Hb_006018_060 Hb_006018_060 Hb_000676_340--Hb_006018_060 Hb_000676_340--Hb_002774_050 Hb_002260_030 Hb_002260_030 Hb_000676_340--Hb_002260_030 Hb_003581_300 Hb_003581_300 Hb_000676_340--Hb_003581_300 Hb_000676_340--Hb_001123_210 Hb_000676_340--Hb_000178_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.108402 0.0460643 0.431277 0.0227162 0.033201
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.4079 0.803622 1.18798 0.277043 0.182523

CAGE analysis