Hb_001959_160

Information

Type -
Description -
Location Contig1959: 121752-123644
Sequence    

Annotation

kegg
ID pop:POPTR_0010s07440g
description POPTRDRAFT_768928; hypothetical protein
nr
ID XP_012077639.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
swissprot
ID Q9LTV8
description Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
trembl
ID A0A067KAU9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12895 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001959_160 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
2 Hb_003943_030 0.0689254815 - - PREDICTED: pentatricopeptide repeat-containing protein At1g32415, mitochondrial [Jatropha curcas]
3 Hb_008085_040 0.0953552034 - - Pentatricopeptide repeat-containing protein, mitochondrial [Glycine soja]
4 Hb_002290_040 0.0958762666 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001153_220 0.1016640371 - - PREDICTED: UDP-galactose/UDP-glucose transporter 2 [Jatropha curcas]
6 Hb_000156_100 0.1083007041 - - PREDICTED: uncharacterized mitochondrial protein ymf11 [Jatropha curcas]
7 Hb_006846_110 0.1127155795 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61800 [Jatropha curcas]
8 Hb_007429_030 0.1155132062 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
9 Hb_000836_080 0.1168987796 - - PREDICTED: pentatricopeptide repeat-containing protein At2g46050, mitochondrial [Jatropha curcas]
10 Hb_001396_230 0.118440129 - - hypothetical protein MIMGU_mgv1a023992mg, partial [Erythranthe guttata]
11 Hb_152439_020 0.1203793947 - - PREDICTED: copper-transporting ATPase RAN1 isoform X1 [Jatropha curcas]
12 Hb_131864_040 0.1207495635 - - PREDICTED: uncharacterized protein LOC105649406 isoform X1 [Jatropha curcas]
13 Hb_002603_160 0.1222258463 - - Arginyl-tRNA--protein transferase, putative [Ricinus communis]
14 Hb_000749_250 0.1224429476 - - PREDICTED: lanC-like protein GCR2 [Jatropha curcas]
15 Hb_002897_060 0.122936987 - - PREDICTED: uncharacterized protein LOC105649233 [Jatropha curcas]
16 Hb_002756_020 0.1241973045 transcription factor TF Family: HB bel1 homeotic protein, putative [Ricinus communis]
17 Hb_003408_030 0.1242814811 - - PREDICTED: protein YIF1B [Jatropha curcas]
18 Hb_004410_100 0.1248558164 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 21 [Jatropha curcas]
19 Hb_006816_450 0.1261180518 - - conserved hypothetical protein [Ricinus communis]
20 Hb_119600_040 0.127124718 - - hypothetical protein JCGZ_08045 [Jatropha curcas]

Gene co-expression network

sample Hb_001959_160 Hb_001959_160 Hb_003943_030 Hb_003943_030 Hb_001959_160--Hb_003943_030 Hb_008085_040 Hb_008085_040 Hb_001959_160--Hb_008085_040 Hb_002290_040 Hb_002290_040 Hb_001959_160--Hb_002290_040 Hb_001153_220 Hb_001153_220 Hb_001959_160--Hb_001153_220 Hb_000156_100 Hb_000156_100 Hb_001959_160--Hb_000156_100 Hb_006846_110 Hb_006846_110 Hb_001959_160--Hb_006846_110 Hb_000749_250 Hb_000749_250 Hb_003943_030--Hb_000749_250 Hb_001232_130 Hb_001232_130 Hb_003943_030--Hb_001232_130 Hb_007429_030 Hb_007429_030 Hb_003943_030--Hb_007429_030 Hb_003943_030--Hb_000156_100 Hb_003943_030--Hb_002290_040 Hb_007229_060 Hb_007229_060 Hb_008085_040--Hb_007229_060 Hb_000223_150 Hb_000223_150 Hb_008085_040--Hb_000223_150 Hb_008085_040--Hb_000156_100 Hb_001396_230 Hb_001396_230 Hb_008085_040--Hb_001396_230 Hb_000861_040 Hb_000861_040 Hb_008085_040--Hb_000861_040 Hb_002756_020 Hb_002756_020 Hb_002290_040--Hb_002756_020 Hb_004429_070 Hb_004429_070 Hb_002290_040--Hb_004429_070 Hb_003147_050 Hb_003147_050 Hb_002290_040--Hb_003147_050 Hb_002290_040--Hb_001153_220 Hb_025214_130 Hb_025214_130 Hb_001153_220--Hb_025214_130 Hb_064997_010 Hb_064997_010 Hb_001153_220--Hb_064997_010 Hb_024952_010 Hb_024952_010 Hb_001153_220--Hb_024952_010 Hb_023292_010 Hb_023292_010 Hb_001153_220--Hb_023292_010 Hb_000836_080 Hb_000836_080 Hb_000156_100--Hb_000836_080 Hb_010710_040 Hb_010710_040 Hb_000156_100--Hb_010710_040 Hb_002794_030 Hb_002794_030 Hb_000156_100--Hb_002794_030 Hb_000983_100 Hb_000983_100 Hb_000156_100--Hb_000983_100 Hb_000836_070 Hb_000836_070 Hb_000156_100--Hb_000836_070 Hb_000156_100--Hb_007229_060 Hb_131864_040 Hb_131864_040 Hb_006846_110--Hb_131864_040 Hb_003018_190 Hb_003018_190 Hb_006846_110--Hb_003018_190 Hb_006846_110--Hb_000223_150 Hb_007747_200 Hb_007747_200 Hb_006846_110--Hb_007747_200 Hb_002603_160 Hb_002603_160 Hb_006846_110--Hb_002603_160 Hb_008453_090 Hb_008453_090 Hb_006846_110--Hb_008453_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.4995 3.27558 0.870701 0.822227 5.02907 8.03213
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.76484 9.98614 23.6259 4.47103 1.15501

CAGE analysis