Hb_001959_210

Information

Type -
Description -
Location Contig1959: 184797-187966
Sequence    

Annotation

kegg
ID tcc:TCM_021033
description Uncharacterized protein isoform 1
nr
ID XP_012077633.1
description PREDICTED: uncharacterized protein LOC105638438 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KM37
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12889 PE=4 SV=1
Gene Ontology
ID GO:0016021
description PREDICTED: uncharacterized protein LOC105638438

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19640: 184798-185301 , PASA_asmbl_19642: 187825-187961
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001959_210 0.0 - - PREDICTED: uncharacterized protein LOC105638438 [Jatropha curcas]
2 Hb_001009_170 0.0615430659 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
3 Hb_000483_200 0.0696680787 - - Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]
4 Hb_006400_060 0.0697325056 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 31 isoform X1 [Jatropha curcas]
5 Hb_127552_030 0.0797670573 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
6 Hb_006400_030 0.0849104043 - - hypothetical protein OsI_01237 [Oryza sativa Indica Group]
7 Hb_024185_020 0.0849355113 - - -
8 Hb_000482_090 0.0860030892 - - PREDICTED: uncharacterized protein LOC105638145 [Jatropha curcas]
9 Hb_003032_040 0.0865293221 - - PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 25 [Jatropha curcas]
10 Hb_155159_030 0.0876309833 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
11 Hb_000206_210 0.0897814379 - - PREDICTED: G patch domain-containing protein 11 [Jatropha curcas]
12 Hb_007044_140 0.0899280588 - - PREDICTED: translation initiation factor eIF-2B subunit delta [Jatropha curcas]
13 Hb_001500_040 0.0907114561 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X2 [Jatropha curcas]
14 Hb_012098_080 0.0910995891 - - KOM, putative [Ricinus communis]
15 Hb_001619_070 0.0917187695 - - PREDICTED: uncharacterized protein LOC103503585 [Cucumis melo]
16 Hb_004254_120 0.0926509593 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004920_120 0.0968175924 - - conserved hypothetical protein [Ricinus communis]
18 Hb_166222_010 0.0978313775 - - hypothetical protein POPTR_0017s08350g [Populus trichocarpa]
19 Hb_012035_050 0.097840204 - - hypothetical protein JCGZ_10788 [Jatropha curcas]
20 Hb_002016_110 0.097886947 - - transducin family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_001959_210 Hb_001959_210 Hb_001009_170 Hb_001009_170 Hb_001959_210--Hb_001009_170 Hb_000483_200 Hb_000483_200 Hb_001959_210--Hb_000483_200 Hb_006400_060 Hb_006400_060 Hb_001959_210--Hb_006400_060 Hb_127552_030 Hb_127552_030 Hb_001959_210--Hb_127552_030 Hb_006400_030 Hb_006400_030 Hb_001959_210--Hb_006400_030 Hb_024185_020 Hb_024185_020 Hb_001959_210--Hb_024185_020 Hb_005490_030 Hb_005490_030 Hb_001009_170--Hb_005490_030 Hb_004920_120 Hb_004920_120 Hb_001009_170--Hb_004920_120 Hb_011671_180 Hb_011671_180 Hb_001009_170--Hb_011671_180 Hb_001619_070 Hb_001619_070 Hb_001009_170--Hb_001619_070 Hb_007044_140 Hb_007044_140 Hb_001009_170--Hb_007044_140 Hb_000483_200--Hb_006400_060 Hb_007426_030 Hb_007426_030 Hb_000483_200--Hb_007426_030 Hb_000483_200--Hb_006400_030 Hb_003032_040 Hb_003032_040 Hb_000483_200--Hb_003032_040 Hb_002016_110 Hb_002016_110 Hb_000483_200--Hb_002016_110 Hb_000808_230 Hb_000808_230 Hb_006400_060--Hb_000808_230 Hb_006400_060--Hb_003032_040 Hb_002079_010 Hb_002079_010 Hb_006400_060--Hb_002079_010 Hb_006400_060--Hb_002016_110 Hb_006400_060--Hb_006400_030 Hb_155159_030 Hb_155159_030 Hb_127552_030--Hb_155159_030 Hb_015934_070 Hb_015934_070 Hb_127552_030--Hb_015934_070 Hb_025240_040 Hb_025240_040 Hb_127552_030--Hb_025240_040 Hb_000976_170 Hb_000976_170 Hb_127552_030--Hb_000976_170 Hb_105123_010 Hb_105123_010 Hb_127552_030--Hb_105123_010 Hb_108350_010 Hb_108350_010 Hb_127552_030--Hb_108350_010 Hb_006400_030--Hb_003032_040 Hb_005618_170 Hb_005618_170 Hb_006400_030--Hb_005618_170 Hb_003976_010 Hb_003976_010 Hb_006400_030--Hb_003976_010 Hb_000107_620 Hb_000107_620 Hb_006400_030--Hb_000107_620 Hb_000206_210 Hb_000206_210 Hb_024185_020--Hb_000206_210 Hb_004254_120 Hb_004254_120 Hb_024185_020--Hb_004254_120 Hb_024185_020--Hb_003032_040 Hb_026527_030 Hb_026527_030 Hb_024185_020--Hb_026527_030 Hb_009838_080 Hb_009838_080 Hb_024185_020--Hb_009838_080 Hb_000648_110 Hb_000648_110 Hb_024185_020--Hb_000648_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.9505 6.64966 6.41433 9.86346 23.2187 21.8992
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.7982 21.333 27.706 23.5872 16.0823

CAGE analysis