Hb_001959_240

Information

Type -
Description -
Location Contig1959: 211107-215776
Sequence    

Annotation

kegg
ID rcu:RCOM_1216950
description Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, putative
nr
ID XP_012077623.1
description PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial [Jatropha curcas]
swissprot
ID B9SQR9
description Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial OS=Ricinus communis GN=GATB PE=3 SV=1
trembl
ID A0A0D2T4A1
description Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial OS=Gossypium raimondii GN=GATB PE=3 SV=1
Gene Ontology
ID GO:0005739
description glutamyl-trna amidotransferase subunit chloroplastic mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19643: 211153-213616 , PASA_asmbl_19644: 213721-213972 , PASA_asmbl_19645: 215166-215410 , PASA_asmbl_19646: 215429-215588
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001959_240 0.0 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial [Jatropha curcas]
2 Hb_015531_030 0.1004309397 - - conserved hypothetical protein [Ricinus communis]
3 Hb_006911_070 0.1041598178 - - 50S ribosomal protein L1p, putative [Ricinus communis]
4 Hb_031042_060 0.1098895121 - - PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
5 Hb_006618_070 0.1239605735 - - PREDICTED: uncharacterized protein LOC105645975 isoform X1 [Jatropha curcas]
6 Hb_001454_150 0.1293553355 - - isoleucyl tRNA synthetase, putative [Ricinus communis]
7 Hb_002498_170 0.1322021913 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
8 Hb_005271_160 0.132438809 - - PREDICTED: uncharacterized protein LOC105645844 [Jatropha curcas]
9 Hb_012098_150 0.1342143673 - - ARC5 protein [Manihot esculenta]
10 Hb_001907_070 0.134959384 - - 50S ribosomal protein L1p, putative [Ricinus communis]
11 Hb_065525_130 0.135165355 - - PREDICTED: probable methionine--tRNA ligase, mitochondrial [Jatropha curcas]
12 Hb_001541_100 0.1357895181 - - PREDICTED: uncharacterized protein LOC105644690 [Jatropha curcas]
13 Hb_001352_080 0.1388687632 - - PREDICTED: uncharacterized protein At5g02240 [Jatropha curcas]
14 Hb_000694_030 0.1390251485 - - PREDICTED: nucleobase-ascorbate transporter 1 [Jatropha curcas]
15 Hb_002016_010 0.1395736464 - - PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Jatropha curcas]
16 Hb_004116_160 0.1410747539 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X2 [Jatropha curcas]
17 Hb_000302_190 0.1423882242 - - PREDICTED: uncharacterized protein At3g49140-like [Jatropha curcas]
18 Hb_000260_710 0.1440188565 - - PREDICTED: uncharacterized protein LOC105649017 isoform X1 [Jatropha curcas]
19 Hb_002105_010 0.1445924471 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002249_040 0.1454271172 transcription factor TF Family: bHLH PREDICTED: transcription factor ICE1-like [Jatropha curcas]

Gene co-expression network

sample Hb_001959_240 Hb_001959_240 Hb_015531_030 Hb_015531_030 Hb_001959_240--Hb_015531_030 Hb_006911_070 Hb_006911_070 Hb_001959_240--Hb_006911_070 Hb_031042_060 Hb_031042_060 Hb_001959_240--Hb_031042_060 Hb_006618_070 Hb_006618_070 Hb_001959_240--Hb_006618_070 Hb_001454_150 Hb_001454_150 Hb_001959_240--Hb_001454_150 Hb_002498_170 Hb_002498_170 Hb_001959_240--Hb_002498_170 Hb_164926_010 Hb_164926_010 Hb_015531_030--Hb_164926_010 Hb_002105_010 Hb_002105_010 Hb_015531_030--Hb_002105_010 Hb_001408_030 Hb_001408_030 Hb_015531_030--Hb_001408_030 Hb_008092_050 Hb_008092_050 Hb_015531_030--Hb_008092_050 Hb_004466_050 Hb_004466_050 Hb_015531_030--Hb_004466_050 Hb_001907_070 Hb_001907_070 Hb_006911_070--Hb_001907_070 Hb_000260_710 Hb_000260_710 Hb_006911_070--Hb_000260_710 Hb_006911_070--Hb_031042_060 Hb_000302_190 Hb_000302_190 Hb_006911_070--Hb_000302_190 Hb_005618_150 Hb_005618_150 Hb_006911_070--Hb_005618_150 Hb_001789_160 Hb_001789_160 Hb_031042_060--Hb_001789_160 Hb_031042_060--Hb_000260_710 Hb_004884_180 Hb_004884_180 Hb_031042_060--Hb_004884_180 Hb_000363_060 Hb_000363_060 Hb_031042_060--Hb_000363_060 Hb_010174_090 Hb_010174_090 Hb_031042_060--Hb_010174_090 Hb_021650_010 Hb_021650_010 Hb_031042_060--Hb_021650_010 Hb_006618_070--Hb_002498_170 Hb_000140_440 Hb_000140_440 Hb_006618_070--Hb_000140_440 Hb_002249_040 Hb_002249_040 Hb_006618_070--Hb_002249_040 Hb_000211_040 Hb_000211_040 Hb_006618_070--Hb_000211_040 Hb_006555_040 Hb_006555_040 Hb_006618_070--Hb_006555_040 Hb_000194_010 Hb_000194_010 Hb_001454_150--Hb_000194_010 Hb_001454_150--Hb_001789_160 Hb_005016_140 Hb_005016_140 Hb_001454_150--Hb_005016_140 Hb_001454_150--Hb_031042_060 Hb_001454_150--Hb_000260_710 Hb_004871_010 Hb_004871_010 Hb_001454_150--Hb_004871_010 Hb_000340_410 Hb_000340_410 Hb_002498_170--Hb_000340_410 Hb_006846_160 Hb_006846_160 Hb_002498_170--Hb_006846_160 Hb_006252_030 Hb_006252_030 Hb_002498_170--Hb_006252_030 Hb_004052_070 Hb_004052_070 Hb_002498_170--Hb_004052_070 Hb_000322_040 Hb_000322_040 Hb_002498_170--Hb_000322_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.2979 4.16797 24.1326 6.32361 10.1104 9.40214
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.70475 1.83093 1.69639 4.08621 20.4368

CAGE analysis