Hb_001959_300

Information

Type -
Description -
Location Contig1959: 291739-294369
Sequence    

Annotation

kegg
ID rcu:RCOM_1217310
description 3-isopropylmalate dehydratase, putative (EC:4.2.1.33)
nr
ID XP_012077610.1
description PREDICTED: 3-isopropylmalate dehydratase large subunit [Jatropha curcas]
swissprot
ID Q94AR8
description 3-isopropylmalate dehydratase large subunit OS=Arabidopsis thaliana GN=IIL1 PE=1 SV=1
trembl
ID A0A067KB28
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12876 PE=4 SV=1
Gene Ontology
ID GO:0009570
description 3-isopropylmalate dehydratase large subunit-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001959_300 0.0 - - PREDICTED: 3-isopropylmalate dehydratase large subunit [Jatropha curcas]
2 Hb_000395_060 0.2185371166 - - -
3 Hb_003963_020 0.2209393926 - - PREDICTED: uncharacterized protein LOC100256672 [Vitis vinifera]
4 Hb_012807_010 0.2292357933 - - -
5 Hb_005009_020 0.2410246691 - - -
6 Hb_007409_020 0.2656744788 - - -
7 Hb_004691_040 0.269287576 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
8 Hb_035905_010 0.2774497074 - - PREDICTED: uncharacterized protein LOC105627956 [Jatropha curcas]
9 Hb_116349_010 0.278167704 - - PREDICTED: uncharacterized protein LOC105763153 [Gossypium raimondii]
10 Hb_075653_020 0.2787837439 - - -
11 Hb_008699_040 0.2807707768 - - -
12 Hb_000107_640 0.282730737 - - conserved hypothetical protein [Ricinus communis]
13 Hb_092820_020 0.284245373 - - ATP binding protein, putative [Ricinus communis]
14 Hb_000331_320 0.2924076558 - - -
15 Hb_004680_020 0.2938538968 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105789475 [Gossypium raimondii]
16 Hb_000847_140 0.297508066 - - -
17 Hb_003209_030 0.3038228645 - - PREDICTED: heparanase-like protein 2 [Jatropha curcas]
18 Hb_000227_130 0.3045130252 - - PREDICTED: peroxiredoxin-2F, mitochondrial [Jatropha curcas]
19 Hb_000061_350 0.3050885779 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000031_040 0.3085325191 - - centromere protein O [Medicago truncatula]

Gene co-expression network

sample Hb_001959_300 Hb_001959_300 Hb_000395_060 Hb_000395_060 Hb_001959_300--Hb_000395_060 Hb_003963_020 Hb_003963_020 Hb_001959_300--Hb_003963_020 Hb_012807_010 Hb_012807_010 Hb_001959_300--Hb_012807_010 Hb_005009_020 Hb_005009_020 Hb_001959_300--Hb_005009_020 Hb_007409_020 Hb_007409_020 Hb_001959_300--Hb_007409_020 Hb_004691_040 Hb_004691_040 Hb_001959_300--Hb_004691_040 Hb_005408_040 Hb_005408_040 Hb_000395_060--Hb_005408_040 Hb_000107_640 Hb_000107_640 Hb_000395_060--Hb_000107_640 Hb_175572_010 Hb_175572_010 Hb_000395_060--Hb_175572_010 Hb_009954_050 Hb_009954_050 Hb_000395_060--Hb_009954_050 Hb_000395_060--Hb_005009_020 Hb_000061_350 Hb_000061_350 Hb_003963_020--Hb_000061_350 Hb_000107_370 Hb_000107_370 Hb_003963_020--Hb_000107_370 Hb_048197_010 Hb_048197_010 Hb_003963_020--Hb_048197_010 Hb_003963_020--Hb_004691_040 Hb_003312_010 Hb_003312_010 Hb_003963_020--Hb_003312_010 Hb_012807_010--Hb_005009_020 Hb_012807_010--Hb_003963_020 Hb_003209_030 Hb_003209_030 Hb_012807_010--Hb_003209_030 Hb_000331_320 Hb_000331_320 Hb_012807_010--Hb_000331_320 Hb_116349_010 Hb_116349_010 Hb_012807_010--Hb_116349_010 Hb_004680_020 Hb_004680_020 Hb_005009_020--Hb_004680_020 Hb_000847_140 Hb_000847_140 Hb_005009_020--Hb_000847_140 Hb_008699_040 Hb_008699_040 Hb_005009_020--Hb_008699_040 Hb_080147_090 Hb_080147_090 Hb_005009_020--Hb_080147_090 Hb_075653_020 Hb_075653_020 Hb_005009_020--Hb_075653_020 Hb_007409_020--Hb_000107_370 Hb_012660_020 Hb_012660_020 Hb_007409_020--Hb_012660_020 Hb_003751_120 Hb_003751_120 Hb_007409_020--Hb_003751_120 Hb_030565_070 Hb_030565_070 Hb_007409_020--Hb_030565_070 Hb_005539_210 Hb_005539_210 Hb_007409_020--Hb_005539_210 Hb_007409_020--Hb_075653_020 Hb_004116_110 Hb_004116_110 Hb_004691_040--Hb_004116_110 Hb_035905_010 Hb_035905_010 Hb_004691_040--Hb_035905_010 Hb_015675_060 Hb_015675_060 Hb_004691_040--Hb_015675_060 Hb_002742_010 Hb_002742_010 Hb_004691_040--Hb_002742_010 Hb_000373_300 Hb_000373_300 Hb_004691_040--Hb_000373_300 Hb_004055_060 Hb_004055_060 Hb_004691_040--Hb_004055_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.842478 0 0 0 1.76101 3.04213
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.01099 6.38256 0.0596519 6.05195 0

CAGE analysis