Hb_001960_020

Information

Type -
Description -
Location Contig1960: 36948-50907
Sequence    

Annotation

kegg
ID rcu:RCOM_1557960
description protein with unknown function
nr
ID XP_012075578.1
description PREDICTED: mitochondrial arginine transporter BAC2 [Jatropha curcas]
swissprot
ID P33303
description Succinate/fumarate mitochondrial transporter OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SFC1 PE=1 SV=2
trembl
ID A0A067KIR8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09196 PE=3 SV=1
Gene Ontology
ID GO:0016021
description mitochondrial arginine transporter bac2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19666: 37079-50636
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001960_020 0.0 - - PREDICTED: mitochondrial arginine transporter BAC2 [Jatropha curcas]
2 Hb_006827_020 0.0671100925 - - conserved hypothetical protein [Ricinus communis]
3 Hb_040262_010 0.0749531422 - - PREDICTED: aspartate carbamoyltransferase 1, chloroplastic [Jatropha curcas]
4 Hb_007317_110 0.0770376868 - - PREDICTED: uncharacterized RNA-binding protein C660.15-like [Jatropha curcas]
5 Hb_002783_240 0.0783534596 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
6 Hb_000700_140 0.0812781534 - - PREDICTED: guanine nucleotide-binding protein-like NSN1 [Jatropha curcas]
7 Hb_007059_010 0.0830382688 - - PREDICTED: uncharacterized protein LOC105642418 [Jatropha curcas]
8 Hb_000808_270 0.0882332457 - - PREDICTED: lon protease homolog 1, mitochondrial [Jatropha curcas]
9 Hb_103012_010 0.0885655572 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
10 Hb_001493_030 0.0900167361 - - hypothetical protein MIMGU_mgv1a005351mg [Erythranthe guttata]
11 Hb_004414_060 0.0900471182 - - hypothetical protein JCGZ_17225 [Jatropha curcas]
12 Hb_003813_130 0.0913338267 - - PREDICTED: plastidic glucose transporter 4 [Jatropha curcas]
13 Hb_000270_630 0.0926435005 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like [Jatropha curcas]
14 Hb_020719_030 0.0939010334 - - PREDICTED: ER membrane protein complex subunit 3-like [Jatropha curcas]
15 Hb_158062_010 0.0939376363 - - PREDICTED: uncharacterized protein LOC105634413 [Jatropha curcas]
16 Hb_011671_240 0.0939789959 - - PREDICTED: WD repeat-containing protein WRAP73-like [Jatropha curcas]
17 Hb_000345_240 0.0948422432 - - PREDICTED: cyclin-H1-1 [Jatropha curcas]
18 Hb_000291_220 0.0949171797 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105638855 [Jatropha curcas]
19 Hb_000640_240 0.0950030145 - - carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis]
20 Hb_066182_010 0.0954376807 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_001960_020 Hb_001960_020 Hb_006827_020 Hb_006827_020 Hb_001960_020--Hb_006827_020 Hb_040262_010 Hb_040262_010 Hb_001960_020--Hb_040262_010 Hb_007317_110 Hb_007317_110 Hb_001960_020--Hb_007317_110 Hb_002783_240 Hb_002783_240 Hb_001960_020--Hb_002783_240 Hb_000700_140 Hb_000700_140 Hb_001960_020--Hb_000700_140 Hb_007059_010 Hb_007059_010 Hb_001960_020--Hb_007059_010 Hb_006827_020--Hb_007317_110 Hb_000808_270 Hb_000808_270 Hb_006827_020--Hb_000808_270 Hb_006827_020--Hb_007059_010 Hb_000538_100 Hb_000538_100 Hb_006827_020--Hb_000538_100 Hb_000011_200 Hb_000011_200 Hb_006827_020--Hb_000011_200 Hb_003813_130 Hb_003813_130 Hb_006827_020--Hb_003813_130 Hb_002671_100 Hb_002671_100 Hb_040262_010--Hb_002671_100 Hb_103012_010 Hb_103012_010 Hb_040262_010--Hb_103012_010 Hb_001946_010 Hb_001946_010 Hb_040262_010--Hb_001946_010 Hb_040262_010--Hb_007317_110 Hb_000260_170 Hb_000260_170 Hb_040262_010--Hb_000260_170 Hb_007594_130 Hb_007594_130 Hb_040262_010--Hb_007594_130 Hb_000085_160 Hb_000085_160 Hb_007317_110--Hb_000085_160 Hb_003665_060 Hb_003665_060 Hb_007317_110--Hb_003665_060 Hb_007317_110--Hb_000808_270 Hb_003964_070 Hb_003964_070 Hb_007317_110--Hb_003964_070 Hb_007317_110--Hb_007059_010 Hb_002783_240--Hb_007059_010 Hb_002783_240--Hb_103012_010 Hb_005211_100 Hb_005211_100 Hb_002783_240--Hb_005211_100 Hb_002783_240--Hb_040262_010 Hb_002783_240--Hb_001946_010 Hb_000345_240 Hb_000345_240 Hb_002783_240--Hb_000345_240 Hb_001493_030 Hb_001493_030 Hb_000700_140--Hb_001493_030 Hb_030116_020 Hb_030116_020 Hb_000700_140--Hb_030116_020 Hb_143629_110 Hb_143629_110 Hb_000700_140--Hb_143629_110 Hb_000123_210 Hb_000123_210 Hb_000700_140--Hb_000123_210 Hb_000367_010 Hb_000367_010 Hb_000700_140--Hb_000367_010 Hb_106371_010 Hb_106371_010 Hb_000700_140--Hb_106371_010 Hb_007059_010--Hb_000538_100 Hb_007059_010--Hb_103012_010 Hb_009775_020 Hb_009775_020 Hb_007059_010--Hb_009775_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.30365 2.86403 4.22645 4.98418 8.95588 8.71792
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.30399 5.75666 5.33019 7.35199 1.75427

CAGE analysis