Hb_001960_040

Information

Type -
Description -
Location Contig1960: 89487-95453
Sequence    

Annotation

kegg
ID pop:POPTR_0001s12470g
description POPTRDRAFT_1066348; CTP synthase family protein
nr
ID XP_012075581.1
description PREDICTED: CTP synthase [Jatropha curcas]
swissprot
ID Q54V77
description CTP synthase OS=Dictyostelium discoideum GN=ctps PE=3 SV=1
trembl
ID A0A067KRJ1
description CTP synthase OS=Jatropha curcas GN=JCGZ_09198 PE=3 SV=1
Gene Ontology
ID GO:0003883
description ctp synthase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19669: 89544-93375 , PASA_asmbl_19670: 89544-95299
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001960_040 0.0 - - PREDICTED: CTP synthase [Jatropha curcas]
2 Hb_000421_180 0.0976205823 - - ATP binding protein, putative [Ricinus communis]
3 Hb_002188_130 0.118672648 - - PREDICTED: uncharacterized protein LOC105650815 isoform X2 [Jatropha curcas]
4 Hb_001357_140 0.1211941073 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000412_110 0.1303938972 - - Rop4 [Hevea brasiliensis]
6 Hb_000805_120 0.1347369856 - - ubiquitin fusion degradaton protein, putative [Ricinus communis]
7 Hb_001357_180 0.1349497076 - - hypothetical protein CISIN_1g036415mg [Citrus sinensis]
8 Hb_007432_030 0.1350734184 - - acyl-CoA thioesterase, putative [Ricinus communis]
9 Hb_000576_010 0.135477029 - - PREDICTED: uncharacterized protein LOC105638289 [Jatropha curcas]
10 Hb_005000_210 0.1370534933 - - PREDICTED: translation machinery-associated protein 22 [Jatropha curcas]
11 Hb_000676_220 0.138353892 - - ADP-ribosylation factor, putative [Ricinus communis]
12 Hb_000317_030 0.1384676371 transcription factor TF Family: ULT PREDICTED: protein ULTRAPETALA 1-like [Jatropha curcas]
13 Hb_003732_020 0.1391370644 - - PREDICTED: phosphoglucomutase, chloroplastic-like [Populus euphratica]
14 Hb_035273_030 0.1406193253 rubber biosynthesis Gene Name: Mevalonate kinase mevalonate kinase [Hevea brasiliensis]
15 Hb_000023_230 0.1417263949 - - PREDICTED: uncharacterized protein LOC105637526 [Jatropha curcas]
16 Hb_000139_410 0.1425852812 transcription factor TF Family: NF-YC hypothetical protein POPTR_0010s03730g [Populus trichocarpa]
17 Hb_004994_170 0.1426821029 - - PREDICTED: uncharacterized protein LOC105643024 [Jatropha curcas]
18 Hb_000733_070 0.145624695 - - PREDICTED: rop guanine nucleotide exchange factor 5 [Jatropha curcas]
19 Hb_000041_080 0.1469578467 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
20 Hb_004657_050 0.1478485116 - - PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Jatropha curcas]

Gene co-expression network

sample Hb_001960_040 Hb_001960_040 Hb_000421_180 Hb_000421_180 Hb_001960_040--Hb_000421_180 Hb_002188_130 Hb_002188_130 Hb_001960_040--Hb_002188_130 Hb_001357_140 Hb_001357_140 Hb_001960_040--Hb_001357_140 Hb_000412_110 Hb_000412_110 Hb_001960_040--Hb_000412_110 Hb_000805_120 Hb_000805_120 Hb_001960_040--Hb_000805_120 Hb_001357_180 Hb_001357_180 Hb_001960_040--Hb_001357_180 Hb_000421_180--Hb_001357_140 Hb_114893_020 Hb_114893_020 Hb_000421_180--Hb_114893_020 Hb_000421_180--Hb_001357_180 Hb_000421_180--Hb_002188_130 Hb_000317_490 Hb_000317_490 Hb_000421_180--Hb_000317_490 Hb_005000_210 Hb_005000_210 Hb_002188_130--Hb_005000_210 Hb_001269_680 Hb_001269_680 Hb_002188_130--Hb_001269_680 Hb_005147_100 Hb_005147_100 Hb_002188_130--Hb_005147_100 Hb_000230_200 Hb_000230_200 Hb_002188_130--Hb_000230_200 Hb_004678_040 Hb_004678_040 Hb_002188_130--Hb_004678_040 Hb_000141_040 Hb_000141_040 Hb_002188_130--Hb_000141_040 Hb_001357_140--Hb_001357_180 Hb_003787_020 Hb_003787_020 Hb_001357_140--Hb_003787_020 Hb_003376_040 Hb_003376_040 Hb_001357_140--Hb_003376_040 Hb_001671_080 Hb_001671_080 Hb_001357_140--Hb_001671_080 Hb_000676_220 Hb_000676_220 Hb_000412_110--Hb_000676_220 Hb_000418_180 Hb_000418_180 Hb_000412_110--Hb_000418_180 Hb_023386_080 Hb_023386_080 Hb_000412_110--Hb_023386_080 Hb_000329_040 Hb_000329_040 Hb_000412_110--Hb_000329_040 Hb_000041_080 Hb_000041_080 Hb_000412_110--Hb_000041_080 Hb_002529_100 Hb_002529_100 Hb_000412_110--Hb_002529_100 Hb_145880_030 Hb_145880_030 Hb_000805_120--Hb_145880_030 Hb_002045_040 Hb_002045_040 Hb_000805_120--Hb_002045_040 Hb_001662_070 Hb_001662_070 Hb_000805_120--Hb_001662_070 Hb_008686_080 Hb_008686_080 Hb_000805_120--Hb_008686_080 Hb_023226_040 Hb_023226_040 Hb_000805_120--Hb_023226_040 Hb_000251_070 Hb_000251_070 Hb_000805_120--Hb_000251_070 Hb_001357_180--Hb_005000_210 Hb_000139_410 Hb_000139_410 Hb_001357_180--Hb_000139_410 Hb_001357_180--Hb_002188_130 Hb_000031_060 Hb_000031_060 Hb_001357_180--Hb_000031_060 Hb_003732_020 Hb_003732_020 Hb_001357_180--Hb_003732_020 Hb_000445_180 Hb_000445_180 Hb_001357_180--Hb_000445_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
87.5362 15.7176 32.1195 12.8572 21.6303 30.6429
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
76.7801 40.0895 51.8361 14.7008 8.53474

CAGE analysis