Hb_001963_110

Information

Type -
Description -
Location Contig1963: 196619-200134
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19691: 196637-197004
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001963_110 0.0 - - -
2 Hb_000442_170 0.1194743033 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
3 Hb_002308_060 0.1196604934 - - PREDICTED: cytochrome P450 704C1-like [Jatropha curcas]
4 Hb_003992_220 0.1226013081 - - s-receptor kinase, putative [Ricinus communis]
5 Hb_001677_230 0.1317886522 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
6 Hb_000776_020 0.1324386021 transcription factor TF Family: M-type hypothetical protein JCGZ_25594 [Jatropha curcas]
7 Hb_002888_060 0.133828026 - - PREDICTED: phospholipase SGR2 isoform X1 [Jatropha curcas]
8 Hb_001109_130 0.137980937 - - PREDICTED: coiled-coil domain-containing protein 136 isoform X1 [Jatropha curcas]
9 Hb_006594_080 0.1426565518 - - beta-glucosidase, putative [Ricinus communis]
10 Hb_170878_060 0.1456066145 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
11 Hb_031862_200 0.1457946199 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]
12 Hb_029866_110 0.1485034379 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter C family member 10-like [Jatropha curcas]
13 Hb_013848_030 0.148747164 - - PREDICTED: probable aminotransferase TAT2 [Jatropha curcas]
14 Hb_000215_250 0.1516910055 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
15 Hb_000191_100 0.1517809333 - - cytochrome P450, putative [Ricinus communis]
16 Hb_002217_390 0.1526645208 - - PREDICTED: galactokinase [Jatropha curcas]
17 Hb_001301_010 0.1529080042 - - receptor protein kinase, putative [Ricinus communis]
18 Hb_000264_340 0.1565479489 - - PREDICTED: callose synthase 11-like isoform X1 [Jatropha curcas]
19 Hb_000594_130 0.1565791516 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_001971_050 0.1571481514 - - WD-repeat protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001963_110 Hb_001963_110 Hb_000442_170 Hb_000442_170 Hb_001963_110--Hb_000442_170 Hb_002308_060 Hb_002308_060 Hb_001963_110--Hb_002308_060 Hb_003992_220 Hb_003992_220 Hb_001963_110--Hb_003992_220 Hb_001677_230 Hb_001677_230 Hb_001963_110--Hb_001677_230 Hb_000776_020 Hb_000776_020 Hb_001963_110--Hb_000776_020 Hb_002888_060 Hb_002888_060 Hb_001963_110--Hb_002888_060 Hb_001301_010 Hb_001301_010 Hb_000442_170--Hb_001301_010 Hb_000442_170--Hb_000776_020 Hb_000442_170--Hb_003992_220 Hb_006594_080 Hb_006594_080 Hb_000442_170--Hb_006594_080 Hb_000191_100 Hb_000191_100 Hb_000442_170--Hb_000191_100 Hb_002308_060--Hb_003992_220 Hb_000597_080 Hb_000597_080 Hb_002308_060--Hb_000597_080 Hb_170878_060 Hb_170878_060 Hb_002308_060--Hb_170878_060 Hb_001607_070 Hb_001607_070 Hb_002308_060--Hb_001607_070 Hb_092029_010 Hb_092029_010 Hb_002308_060--Hb_092029_010 Hb_003992_220--Hb_170878_060 Hb_167211_010 Hb_167211_010 Hb_003992_220--Hb_167211_010 Hb_001778_040 Hb_001778_040 Hb_003992_220--Hb_001778_040 Hb_001109_130 Hb_001109_130 Hb_003992_220--Hb_001109_130 Hb_001677_230--Hb_002888_060 Hb_001619_010 Hb_001619_010 Hb_001677_230--Hb_001619_010 Hb_082683_010 Hb_082683_010 Hb_001677_230--Hb_082683_010 Hb_006096_020 Hb_006096_020 Hb_001677_230--Hb_006096_020 Hb_033594_100 Hb_033594_100 Hb_001677_230--Hb_033594_100 Hb_000776_020--Hb_001301_010 Hb_007850_110 Hb_007850_110 Hb_000776_020--Hb_007850_110 Hb_000416_010 Hb_000416_010 Hb_000776_020--Hb_000416_010 Hb_017098_050 Hb_017098_050 Hb_000776_020--Hb_017098_050 Hb_000776_020--Hb_001109_130 Hb_001141_040 Hb_001141_040 Hb_002888_060--Hb_001141_040 Hb_002888_060--Hb_000191_100 Hb_001496_120 Hb_001496_120 Hb_002888_060--Hb_001496_120 Hb_001268_300 Hb_001268_300 Hb_002888_060--Hb_001268_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0770452 0.852019 0.640646 0.988814 0.0181227 0.043979
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.021995 0 0.0328387 2.06513 2.45216

CAGE analysis