Hb_001966_010

Information

Type -
Description -
Location Contig1966: 29646-32631
Sequence    

Annotation

kegg
ID cit:102611294
description uncharacterized LOC102611294
nr
ID XP_006480387.1
description PREDICTED: uncharacterized protein LOC102611294 [Citrus sinensis]
swissprot
ID -
description -
trembl
ID I7AYD2
description Retropepsin-like protein OS=Phaseolus vulgaris PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001966_010 0.0 - - PREDICTED: uncharacterized protein LOC102611294 [Citrus sinensis]
2 Hb_006586_010 0.2858842971 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
3 Hb_000368_080 0.3060320928 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
4 Hb_148850_010 0.3136512456 - - PREDICTED: potassium transporter 5-like [Jatropha curcas]
5 Hb_002382_030 0.3238193352 - - PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2-like isoform X2 [Malus domestica]
6 Hb_128558_010 0.3280106398 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
7 Hb_000340_440 0.3392850776 - - PREDICTED: gibberellin receptor GID1B [Jatropha curcas]
8 Hb_004048_060 0.3445705517 - - hypothetical protein PRUPE_ppa023788mg, partial [Prunus persica]
9 Hb_012754_030 0.3486269708 - - PREDICTED: uncharacterized protein LOC105633150 isoform X1 [Jatropha curcas]
10 Hb_000866_150 0.3488680344 - - -
11 Hb_002028_060 0.3488911366 - - -
12 Hb_000392_330 0.3542486051 - - PREDICTED: protein kinase 2B, chloroplastic-like [Jatropha curcas]
13 Hb_132303_010 0.3571924931 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
14 Hb_002750_020 0.3574634353 - - PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Jatropha curcas]
15 Hb_000029_270 0.3576444103 - - PREDICTED: uncharacterized protein LOC105634361 [Jatropha curcas]
16 Hb_030458_010 0.3594527369 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
17 Hb_000892_070 0.3596338108 - - PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Jatropha curcas]
18 Hb_003847_020 0.3602142339 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
19 Hb_003992_080 0.3605749213 - - PREDICTED: protein LURP-one-related 5 [Jatropha curcas]
20 Hb_001514_230 0.3660313078 - - PREDICTED: pumilio homolog 12-like [Jatropha curcas]

Gene co-expression network

sample Hb_001966_010 Hb_001966_010 Hb_006586_010 Hb_006586_010 Hb_001966_010--Hb_006586_010 Hb_000368_080 Hb_000368_080 Hb_001966_010--Hb_000368_080 Hb_148850_010 Hb_148850_010 Hb_001966_010--Hb_148850_010 Hb_002382_030 Hb_002382_030 Hb_001966_010--Hb_002382_030 Hb_128558_010 Hb_128558_010 Hb_001966_010--Hb_128558_010 Hb_000340_440 Hb_000340_440 Hb_001966_010--Hb_000340_440 Hb_006586_010--Hb_000368_080 Hb_007757_140 Hb_007757_140 Hb_006586_010--Hb_007757_140 Hb_004195_250 Hb_004195_250 Hb_006586_010--Hb_004195_250 Hb_001190_090 Hb_001190_090 Hb_006586_010--Hb_001190_090 Hb_002118_040 Hb_002118_040 Hb_006586_010--Hb_002118_040 Hb_000368_080--Hb_004195_250 Hb_165666_010 Hb_165666_010 Hb_000368_080--Hb_165666_010 Hb_003688_080 Hb_003688_080 Hb_000368_080--Hb_003688_080 Hb_000368_080--Hb_148850_010 Hb_058143_010 Hb_058143_010 Hb_148850_010--Hb_058143_010 Hb_000094_110 Hb_000094_110 Hb_148850_010--Hb_000094_110 Hb_148850_010--Hb_000340_440 Hb_004942_020 Hb_004942_020 Hb_148850_010--Hb_004942_020 Hb_113906_010 Hb_113906_010 Hb_148850_010--Hb_113906_010 Hb_003992_080 Hb_003992_080 Hb_148850_010--Hb_003992_080 Hb_002588_040 Hb_002588_040 Hb_002382_030--Hb_002588_040 Hb_000249_120 Hb_000249_120 Hb_002382_030--Hb_000249_120 Hb_001146_060 Hb_001146_060 Hb_002382_030--Hb_001146_060 Hb_001214_080 Hb_001214_080 Hb_002382_030--Hb_001214_080 Hb_012754_030 Hb_012754_030 Hb_002382_030--Hb_012754_030 Hb_002067_140 Hb_002067_140 Hb_002382_030--Hb_002067_140 Hb_000866_150 Hb_000866_150 Hb_128558_010--Hb_000866_150 Hb_070926_010 Hb_070926_010 Hb_128558_010--Hb_070926_010 Hb_002609_180 Hb_002609_180 Hb_128558_010--Hb_002609_180 Hb_000421_190 Hb_000421_190 Hb_128558_010--Hb_000421_190 Hb_096225_020 Hb_096225_020 Hb_128558_010--Hb_096225_020 Hb_000816_110 Hb_000816_110 Hb_128558_010--Hb_000816_110 Hb_002784_140 Hb_002784_140 Hb_000340_440--Hb_002784_140 Hb_000316_100 Hb_000316_100 Hb_000340_440--Hb_000316_100 Hb_000340_440--Hb_000094_110 Hb_000175_130 Hb_000175_130 Hb_000340_440--Hb_000175_130 Hb_006132_050 Hb_006132_050 Hb_000340_440--Hb_006132_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0168432 0.00694269 0 0 0 0.00797207
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0451383 0.0286384 0 0

CAGE analysis