Hb_001969_030

Information

Type -
Description -
Location Contig1969: 22346-24757
Sequence    

Annotation

kegg
ID rcu:RCOM_0897630
description hypothetical protein
nr
ID XP_002517567.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RUZ8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0897630 PE=4 SV=1
Gene Ontology
ID GO:0009505
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001969_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002837_120 0.049092357 - - PREDICTED: legumin A-like [Jatropha curcas]
3 Hb_000853_020 0.0495753874 - - PREDICTED: endoglucanase 17 [Populus euphratica]
4 Hb_000175_160 0.0691325467 - - PREDICTED: protein TOO MANY MOUTHS [Jatropha curcas]
5 Hb_022092_100 0.0736628553 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003641_040 0.0739201081 - - hypothetical protein POPTR_0006s14010g [Populus trichocarpa]
7 Hb_056196_020 0.0795598751 - - PREDICTED: uncharacterized protein LOC105631532 isoform X1 [Jatropha curcas]
8 Hb_000045_040 0.0836084629 - - anthranilate synthase component I, putative [Ricinus communis]
9 Hb_001123_180 0.0837805088 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_156853_010 0.0861235034 - - PREDICTED: vinorine synthase-like [Populus euphratica]
11 Hb_009838_170 0.0881157804 - - Arylacetamide deacetylase, putative [Ricinus communis]
12 Hb_000691_060 0.0885582097 - - RecName: Full=(S)-hydroxynitrile lyase; AltName: Full=(S)-acetone-cyanohydrin lyase; AltName: Full=Oxynitrilase [Hevea brasiliensis]
13 Hb_004117_240 0.0907414037 - - protease inhibitor/seed storage/ltp family [Cicer arietinum]
14 Hb_000221_010 0.0909170907 - - polyprotein [Oryza australiensis]
15 Hb_001019_110 0.0909496894 - - PREDICTED: cytochrome P450 734A1 [Jatropha curcas]
16 Hb_000381_060 0.0909624632 - - -
17 Hb_002817_020 0.0910347047 - - -
18 Hb_002391_280 0.0910542391 - - PREDICTED: ammonium transporter 3 member 1-like [Jatropha curcas]
19 Hb_001132_020 0.0910960079 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
20 Hb_000008_100 0.0911199563 - - Cyclic nucleotide-gated channel 15 [Theobroma cacao]

Gene co-expression network

sample Hb_001969_030 Hb_001969_030 Hb_002837_120 Hb_002837_120 Hb_001969_030--Hb_002837_120 Hb_000853_020 Hb_000853_020 Hb_001969_030--Hb_000853_020 Hb_000175_160 Hb_000175_160 Hb_001969_030--Hb_000175_160 Hb_022092_100 Hb_022092_100 Hb_001969_030--Hb_022092_100 Hb_003641_040 Hb_003641_040 Hb_001969_030--Hb_003641_040 Hb_056196_020 Hb_056196_020 Hb_001969_030--Hb_056196_020 Hb_002837_120--Hb_056196_020 Hb_002837_120--Hb_000853_020 Hb_169136_010 Hb_169136_010 Hb_002837_120--Hb_169136_010 Hb_004174_030 Hb_004174_030 Hb_002837_120--Hb_004174_030 Hb_004097_030 Hb_004097_030 Hb_002837_120--Hb_004097_030 Hb_000853_020--Hb_000175_160 Hb_000853_020--Hb_022092_100 Hb_000691_060 Hb_000691_060 Hb_000853_020--Hb_000691_060 Hb_000334_100 Hb_000334_100 Hb_000853_020--Hb_000334_100 Hb_000008_100 Hb_000008_100 Hb_000853_020--Hb_000008_100 Hb_000175_160--Hb_022092_100 Hb_000175_160--Hb_000691_060 Hb_004117_240 Hb_004117_240 Hb_000175_160--Hb_004117_240 Hb_000307_080 Hb_000307_080 Hb_000175_160--Hb_000307_080 Hb_000173_070 Hb_000173_070 Hb_000175_160--Hb_000173_070 Hb_022092_100--Hb_000691_060 Hb_003667_030 Hb_003667_030 Hb_022092_100--Hb_003667_030 Hb_000489_050 Hb_000489_050 Hb_022092_100--Hb_000489_050 Hb_022092_100--Hb_000334_100 Hb_000675_130 Hb_000675_130 Hb_003641_040--Hb_000675_130 Hb_008226_050 Hb_008226_050 Hb_003641_040--Hb_008226_050 Hb_003641_040--Hb_000853_020 Hb_000394_120 Hb_000394_120 Hb_003641_040--Hb_000394_120 Hb_001123_180 Hb_001123_180 Hb_003641_040--Hb_001123_180 Hb_056196_020--Hb_004097_030 Hb_005914_100 Hb_005914_100 Hb_056196_020--Hb_005914_100 Hb_056196_020--Hb_004174_030 Hb_003018_210 Hb_003018_210 Hb_056196_020--Hb_003018_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0352528 6.3999 2.0394 0 0.0205378
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0138797 0.0713315

CAGE analysis