Hb_001969_080

Information

Type -
Description -
Location Contig1969: 114288-119518
Sequence    

Annotation

kegg
ID pop:POPTR_0001s17480g
description POPTRDRAFT_829515; hydrolase family protein
nr
ID XP_012073269.1
description PREDICTED: uncharacterized protein LOC105634921 [Jatropha curcas]
swissprot
ID O05235
description Uncharacterized hydrolase YugF OS=Bacillus subtilis (strain 168) GN=yugF PE=3 SV=1
trembl
ID A0A067KQ90
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06209 PE=4 SV=1
Gene Ontology
ID GO:0016787
description hydrolase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19735: 114467-119330 , PASA_asmbl_19736: 114467-117727
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001969_080 0.0 - - PREDICTED: uncharacterized protein LOC105634921 [Jatropha curcas]
2 Hb_000538_230 0.107097292 - - PREDICTED: auxin response factor 8 isoform X1 [Jatropha curcas]
3 Hb_000215_320 0.1109000244 - - phosphofructokinase [Hevea brasiliensis]
4 Hb_003373_030 0.1165014388 - - PREDICTED: serine/threonine-protein kinase ATG1 [Jatropha curcas]
5 Hb_001377_510 0.1196234759 - - ormdl, putative [Ricinus communis]
6 Hb_028487_140 0.1242375665 - - PREDICTED: myosin-binding protein 2 [Jatropha curcas]
7 Hb_000106_140 0.1261761146 - - -
8 Hb_001157_200 0.1306937008 - - PREDICTED: uncharacterized protein LOC105645131 [Jatropha curcas]
9 Hb_004143_040 0.1310674265 - - argininosuccinate lyase, putative [Ricinus communis]
10 Hb_000023_280 0.1336714431 - - hypothetical protein POPTR_0006s28210g [Populus trichocarpa]
11 Hb_032278_030 0.1354103941 - - protein phosphatase 2c, putative [Ricinus communis]
12 Hb_000614_250 0.1363421282 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
13 Hb_007747_080 0.1365270716 - - conserved hypothetical protein [Ricinus communis]
14 Hb_029584_050 0.1385402549 - - PREDICTED: inorganic pyrophosphatase 3 [Jatropha curcas]
15 Hb_001268_410 0.1390113412 transcription factor TF Family: TCP PREDICTED: transcription factor TCP20 [Jatropha curcas]
16 Hb_001439_100 0.139676587 - - PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10 [Jatropha curcas]
17 Hb_004117_110 0.1405785437 - - hypothetical protein POPTR_0016s14420g [Populus trichocarpa]
18 Hb_000414_130 0.1406028323 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
19 Hb_000329_340 0.1416173152 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001205_240 0.1419645347 - - PREDICTED: uncharacterized protein LOC105645528 [Jatropha curcas]

Gene co-expression network

sample Hb_001969_080 Hb_001969_080 Hb_000538_230 Hb_000538_230 Hb_001969_080--Hb_000538_230 Hb_000215_320 Hb_000215_320 Hb_001969_080--Hb_000215_320 Hb_003373_030 Hb_003373_030 Hb_001969_080--Hb_003373_030 Hb_001377_510 Hb_001377_510 Hb_001969_080--Hb_001377_510 Hb_028487_140 Hb_028487_140 Hb_001969_080--Hb_028487_140 Hb_000106_140 Hb_000106_140 Hb_001969_080--Hb_000106_140 Hb_000430_020 Hb_000430_020 Hb_000538_230--Hb_000430_020 Hb_000538_230--Hb_000215_320 Hb_001159_110 Hb_001159_110 Hb_000538_230--Hb_001159_110 Hb_005074_030 Hb_005074_030 Hb_000538_230--Hb_005074_030 Hb_001205_240 Hb_001205_240 Hb_000538_230--Hb_001205_240 Hb_003761_010 Hb_003761_010 Hb_000538_230--Hb_003761_010 Hb_000890_150 Hb_000890_150 Hb_000215_320--Hb_000890_150 Hb_033594_080 Hb_033594_080 Hb_000215_320--Hb_033594_080 Hb_004117_110 Hb_004117_110 Hb_000215_320--Hb_004117_110 Hb_000749_050 Hb_000749_050 Hb_000215_320--Hb_000749_050 Hb_017387_010 Hb_017387_010 Hb_000215_320--Hb_017387_010 Hb_004143_040 Hb_004143_040 Hb_003373_030--Hb_004143_040 Hb_008770_030 Hb_008770_030 Hb_003373_030--Hb_008770_030 Hb_000866_170 Hb_000866_170 Hb_003373_030--Hb_000866_170 Hb_032278_030 Hb_032278_030 Hb_003373_030--Hb_032278_030 Hb_015807_150 Hb_015807_150 Hb_003373_030--Hb_015807_150 Hb_000890_210 Hb_000890_210 Hb_003373_030--Hb_000890_210 Hb_000645_090 Hb_000645_090 Hb_001377_510--Hb_000645_090 Hb_000003_590 Hb_000003_590 Hb_001377_510--Hb_000003_590 Hb_022115_020 Hb_022115_020 Hb_001377_510--Hb_022115_020 Hb_007416_090 Hb_007416_090 Hb_001377_510--Hb_007416_090 Hb_002110_190 Hb_002110_190 Hb_001377_510--Hb_002110_190 Hb_007638_030 Hb_007638_030 Hb_001377_510--Hb_007638_030 Hb_001146_010 Hb_001146_010 Hb_028487_140--Hb_001146_010 Hb_001411_140 Hb_001411_140 Hb_028487_140--Hb_001411_140 Hb_002307_270 Hb_002307_270 Hb_028487_140--Hb_002307_270 Hb_034688_020 Hb_034688_020 Hb_028487_140--Hb_034688_020 Hb_000172_100 Hb_000172_100 Hb_028487_140--Hb_000172_100 Hb_002983_050 Hb_002983_050 Hb_000106_140--Hb_002983_050 Hb_000009_240 Hb_000009_240 Hb_000106_140--Hb_000009_240 Hb_000106_140--Hb_001377_510 Hb_002391_270 Hb_002391_270 Hb_000106_140--Hb_002391_270 Hb_005914_080 Hb_005914_080 Hb_000106_140--Hb_005914_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.72439 30.3036 5.22166 34.3487 9.27572 18.5208
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.9938 20.1989 24.6254 27.0557 13.6877

CAGE analysis