Hb_001969_090

Information

Type -
Description -
Location Contig1969: 136209-140616
Sequence    

Annotation

kegg
ID rcu:RCOM_0897010
description Plastidic ATP/ADP-transporter, putative
nr
ID AAZ23108.1
description plastid ATP/ADP transport protein 2 [Manihot esculenta]
swissprot
ID O24381
description Plastidic ATP/ADP-transporter OS=Solanum tuberosum PE=2 SV=2
trembl
ID Q1AK41
description Plastid ATP/ADP transport protein 2 OS=Manihot esculenta GN=AATP2 PE=2 SV=1
Gene Ontology
ID GO:0016021
description plastidic atp adp-transporter-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19739: 136275-140641
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001969_090 0.0 - - plastid ATP/ADP transport protein 2 [Manihot esculenta]
2 Hb_007747_200 0.0872222937 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g37570 [Jatropha curcas]
3 Hb_000317_280 0.0950668679 - - PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At5g08490 [Jatropha curcas]
4 Hb_000575_150 0.1009428279 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
5 Hb_003687_240 0.1033421072 - - PREDICTED: cryptochrome-1 [Jatropha curcas]
6 Hb_010883_090 0.104774212 - - PREDICTED: uncharacterized protein LOC105638888 isoform X1 [Jatropha curcas]
7 Hb_000805_020 0.1070020318 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
8 Hb_025557_030 0.107607601 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Jatropha curcas]
9 Hb_000343_130 0.1090119332 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1-like [Jatropha curcas]
10 Hb_021596_040 0.1166184513 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_000318_330 0.1177551552 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15630, mitochondrial [Jatropha curcas]
12 Hb_001373_180 0.1181422194 - - PREDICTED: uncharacterized protein LOC105628780 isoform X2 [Jatropha curcas]
13 Hb_001338_040 0.1189485966 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
14 Hb_011214_020 0.1199865793 - - PREDICTED: RNA-binding protein 5 isoform X1 [Jatropha curcas]
15 Hb_012114_040 0.1208102178 - - DNA binding protein, putative [Ricinus communis]
16 Hb_000002_050 0.1209131826 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33990 [Jatropha curcas]
17 Hb_001454_190 0.1216781777 - - PREDICTED: pentatricopeptide repeat-containing protein At3g06920 [Jatropha curcas]
18 Hb_001021_130 0.1221252371 - - PREDICTED: uncharacterized protein LOC105642479 [Jatropha curcas]
19 Hb_000777_030 0.1223624911 - - histone h2a, putative [Ricinus communis]
20 Hb_000503_050 0.1244098988 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 1-like [Gossypium raimondii]

Gene co-expression network

sample Hb_001969_090 Hb_001969_090 Hb_007747_200 Hb_007747_200 Hb_001969_090--Hb_007747_200 Hb_000317_280 Hb_000317_280 Hb_001969_090--Hb_000317_280 Hb_000575_150 Hb_000575_150 Hb_001969_090--Hb_000575_150 Hb_003687_240 Hb_003687_240 Hb_001969_090--Hb_003687_240 Hb_010883_090 Hb_010883_090 Hb_001969_090--Hb_010883_090 Hb_000805_020 Hb_000805_020 Hb_001969_090--Hb_000805_020 Hb_000019_130 Hb_000019_130 Hb_007747_200--Hb_000019_130 Hb_007747_200--Hb_000317_280 Hb_006846_110 Hb_006846_110 Hb_007747_200--Hb_006846_110 Hb_000343_130 Hb_000343_130 Hb_007747_200--Hb_000343_130 Hb_000002_050 Hb_000002_050 Hb_007747_200--Hb_000002_050 Hb_016901_010 Hb_016901_010 Hb_007747_200--Hb_016901_010 Hb_000317_280--Hb_000343_130 Hb_001338_040 Hb_001338_040 Hb_000317_280--Hb_001338_040 Hb_000635_220 Hb_000635_220 Hb_000317_280--Hb_000635_220 Hb_000317_280--Hb_006846_110 Hb_000777_030 Hb_000777_030 Hb_000575_150--Hb_000777_030 Hb_000575_150--Hb_000805_020 Hb_000575_150--Hb_007747_200 Hb_004452_010 Hb_004452_010 Hb_000575_150--Hb_004452_010 Hb_000575_150--Hb_010883_090 Hb_003687_240--Hb_010883_090 Hb_002631_060 Hb_002631_060 Hb_003687_240--Hb_002631_060 Hb_003687_240--Hb_000805_020 Hb_003687_240--Hb_007747_200 Hb_000696_040 Hb_000696_040 Hb_003687_240--Hb_000696_040 Hb_021596_040 Hb_021596_040 Hb_003687_240--Hb_021596_040 Hb_010883_090--Hb_002631_060 Hb_003994_060 Hb_003994_060 Hb_010883_090--Hb_003994_060 Hb_010883_090--Hb_000805_020 Hb_001892_020 Hb_001892_020 Hb_010883_090--Hb_001892_020 Hb_004907_110 Hb_004907_110 Hb_010883_090--Hb_004907_110 Hb_000805_020--Hb_004907_110 Hb_002026_180 Hb_002026_180 Hb_000805_020--Hb_002026_180 Hb_007441_230 Hb_007441_230 Hb_000805_020--Hb_007441_230 Hb_007416_320 Hb_007416_320 Hb_000805_020--Hb_007416_320 Hb_007441_200 Hb_007441_200 Hb_000805_020--Hb_007441_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.1647 37.6594 5.90312 10.2453 14.2246 29.5854
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.7838 46.2989 63.0029 37.4737 15.688

CAGE analysis