Hb_001971_010

Information

Type -
Description -
Location Contig1971: 9105-27681
Sequence    

Annotation

kegg
ID pop:POPTR_0013s14620g
description hypothetical protein
nr
ID AAF19552.1
description F23N19.4 [Arabidopsis thaliana]
swissprot
ID P0C7Q7
description Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1
trembl
ID K7MIJ5
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19789: 11219-11371 , PASA_asmbl_19792: 13949-14729 , PASA_asmbl_19794: 20651-21271 , PASA_asmbl_19795: 21202-21307
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001971_010 0.0 - - F23N19.4 [Arabidopsis thaliana]
2 Hb_001252_130 0.0588422756 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
3 Hb_000331_260 0.0623333495 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
4 Hb_002235_250 0.064223752 - - PREDICTED: cystathionine gamma-synthase 1, chloroplastic [Jatropha curcas]
5 Hb_002600_090 0.0681632846 - - ATP binding protein, putative [Ricinus communis]
6 Hb_006478_020 0.0686444557 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
7 Hb_000172_290 0.0687198628 - - PREDICTED: trafficking protein particle complex subunit 12 [Jatropha curcas]
8 Hb_000054_090 0.07113648 - - zinc finger protein, putative [Ricinus communis]
9 Hb_001711_020 0.0715888803 - - PREDICTED: AP-2 complex subunit mu [Jatropha curcas]
10 Hb_005269_070 0.0719983371 - - PREDICTED: translation factor GUF1 homolog, organellar chromatophore [Jatropha curcas]
11 Hb_000599_250 0.0720210859 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
12 Hb_002169_040 0.0721816784 - - unknown [Populus trichocarpa]
13 Hb_000985_030 0.0724002505 - - PREDICTED: RRP15-like protein [Populus euphratica]
14 Hb_006274_030 0.0738797438 - - F-box and wd40 domain protein, putative [Ricinus communis]
15 Hb_005496_140 0.0767949266 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000173_290 0.0782129687 - - guanylate kinase, putative [Ricinus communis]
17 Hb_029879_070 0.0782347267 - - PREDICTED: phospholipase A I [Jatropha curcas]
18 Hb_156279_020 0.0796582573 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
19 Hb_004934_100 0.0800209796 - - conserved hypothetical protein [Ricinus communis]
20 Hb_026198_070 0.0815112046 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]

Gene co-expression network

sample Hb_001971_010 Hb_001971_010 Hb_001252_130 Hb_001252_130 Hb_001971_010--Hb_001252_130 Hb_000331_260 Hb_000331_260 Hb_001971_010--Hb_000331_260 Hb_002235_250 Hb_002235_250 Hb_001971_010--Hb_002235_250 Hb_002600_090 Hb_002600_090 Hb_001971_010--Hb_002600_090 Hb_006478_020 Hb_006478_020 Hb_001971_010--Hb_006478_020 Hb_000172_290 Hb_000172_290 Hb_001971_010--Hb_000172_290 Hb_005496_140 Hb_005496_140 Hb_001252_130--Hb_005496_140 Hb_000081_160 Hb_000081_160 Hb_001252_130--Hb_000081_160 Hb_000599_250 Hb_000599_250 Hb_001252_130--Hb_000599_250 Hb_000215_110 Hb_000215_110 Hb_001252_130--Hb_000215_110 Hb_000054_090 Hb_000054_090 Hb_001252_130--Hb_000054_090 Hb_156279_020 Hb_156279_020 Hb_000331_260--Hb_156279_020 Hb_004143_060 Hb_004143_060 Hb_000331_260--Hb_004143_060 Hb_005269_070 Hb_005269_070 Hb_000331_260--Hb_005269_070 Hb_000331_260--Hb_000215_110 Hb_001902_030 Hb_001902_030 Hb_000331_260--Hb_001902_030 Hb_011037_030 Hb_011037_030 Hb_000331_260--Hb_011037_030 Hb_002235_250--Hb_005496_140 Hb_002235_250--Hb_000331_260 Hb_000883_020 Hb_000883_020 Hb_002235_250--Hb_000883_020 Hb_000866_010 Hb_000866_010 Hb_002235_250--Hb_000866_010 Hb_000375_350 Hb_000375_350 Hb_002235_250--Hb_000375_350 Hb_000985_030 Hb_000985_030 Hb_002600_090--Hb_000985_030 Hb_002600_090--Hb_000599_250 Hb_000260_030 Hb_000260_030 Hb_002600_090--Hb_000260_030 Hb_001711_020 Hb_001711_020 Hb_002600_090--Hb_001711_020 Hb_001489_080 Hb_001489_080 Hb_002600_090--Hb_001489_080 Hb_000116_270 Hb_000116_270 Hb_006478_020--Hb_000116_270 Hb_006478_020--Hb_000599_250 Hb_003025_100 Hb_003025_100 Hb_006478_020--Hb_003025_100 Hb_006478_020--Hb_000172_290 Hb_001366_180 Hb_001366_180 Hb_006478_020--Hb_001366_180 Hb_054865_150 Hb_054865_150 Hb_000172_290--Hb_054865_150 Hb_000254_090 Hb_000254_090 Hb_000172_290--Hb_000254_090 Hb_026198_070 Hb_026198_070 Hb_000172_290--Hb_026198_070 Hb_002685_210 Hb_002685_210 Hb_000172_290--Hb_002685_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.38905 0.512415 0.981838 1.34779 1.00399 1.45795
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.33924 1.54843 1.49113 1.01173 1.4824

CAGE analysis