Hb_001971_020

Information

Type -
Description -
Location Contig1971: 37749-49133
Sequence    

Annotation

kegg
ID rcu:RCOM_0570940
description oxidoreductase, putative (EC:1.14.99.1)
nr
ID XP_011039105.1
description PREDICTED: alpha-dioxygenase 2 [Populus euphratica]
swissprot
ID Q9C9U3
description Alpha-dioxygenase 2 OS=Arabidopsis thaliana GN=DOX2 PE=2 SV=1
trembl
ID B9SU86
description Oxidoreductase, putative OS=Ricinus communis GN=RCOM_0570940 PE=4 SV=1
Gene Ontology
ID GO:0004601
description alpha-dioxygenase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19798: 46764-48844
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001971_020 0.0 - - PREDICTED: alpha-dioxygenase 2 [Populus euphratica]
2 Hb_001357_360 0.0794574847 - - zinc finger protein, putative [Ricinus communis]
3 Hb_000563_120 0.0992335426 - - hypothetical protein JCGZ_18936 [Jatropha curcas]
4 Hb_008111_010 0.1010538878 - - hypothetical protein VITISV_021527 [Vitis vinifera]
5 Hb_005306_020 0.1064238086 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Jatropha curcas]
6 Hb_000264_340 0.1125639933 - - PREDICTED: callose synthase 11-like isoform X1 [Jatropha curcas]
7 Hb_007320_020 0.1181492989 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X2 [Populus euphratica]
8 Hb_000377_160 0.1226436207 - - PREDICTED: oligopeptide transporter 3 [Jatropha curcas]
9 Hb_123560_050 0.1254262285 - - PREDICTED: probable receptor-like protein kinase At5g24010 [Jatropha curcas]
10 Hb_000767_010 0.1283121882 - - PREDICTED: geraniol 8-hydroxylase-like isoform X2 [Solanum lycopersicum]
11 Hb_005470_040 0.1299906256 - - hypothetical protein POPTR_0015s09760g [Populus trichocarpa]
12 Hb_085010_010 0.1314835113 - - PREDICTED: MLO-like protein 3 isoform X2 [Vitis vinifera]
13 Hb_000614_190 0.1318410803 desease resistance Gene Name: ABC_membrane PREDICTED: putative ABC transporter C family member 15 [Jatropha curcas]
14 Hb_001085_230 0.1356065651 - - PREDICTED: receptor like protein kinase S.2 [Jatropha curcas]
15 Hb_000059_080 0.1369567969 - - PREDICTED: uncharacterized protein LOC105629177 [Jatropha curcas]
16 Hb_005054_280 0.1415612304 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
17 Hb_026144_030 0.1416888944 - - PREDICTED: high affinity nitrate transporter 2.5 [Jatropha curcas]
18 Hb_000603_120 0.1418473811 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
19 Hb_004007_230 0.1418928763 - - PREDICTED: putative formamidase C869.04 isoform X1 [Jatropha curcas]
20 Hb_000649_280 0.1420905456 - - PREDICTED: F-box protein PP2-B10-like [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_001971_020 Hb_001971_020 Hb_001357_360 Hb_001357_360 Hb_001971_020--Hb_001357_360 Hb_000563_120 Hb_000563_120 Hb_001971_020--Hb_000563_120 Hb_008111_010 Hb_008111_010 Hb_001971_020--Hb_008111_010 Hb_005306_020 Hb_005306_020 Hb_001971_020--Hb_005306_020 Hb_000264_340 Hb_000264_340 Hb_001971_020--Hb_000264_340 Hb_007320_020 Hb_007320_020 Hb_001971_020--Hb_007320_020 Hb_003077_140 Hb_003077_140 Hb_001357_360--Hb_003077_140 Hb_000767_010 Hb_000767_010 Hb_001357_360--Hb_000767_010 Hb_005470_040 Hb_005470_040 Hb_001357_360--Hb_005470_040 Hb_123560_050 Hb_123560_050 Hb_001357_360--Hb_123560_050 Hb_004007_230 Hb_004007_230 Hb_001357_360--Hb_004007_230 Hb_114310_050 Hb_114310_050 Hb_000563_120--Hb_114310_050 Hb_000649_280 Hb_000649_280 Hb_000563_120--Hb_000649_280 Hb_000377_160 Hb_000377_160 Hb_000563_120--Hb_000377_160 Hb_001085_230 Hb_001085_230 Hb_000563_120--Hb_001085_230 Hb_009803_030 Hb_009803_030 Hb_000563_120--Hb_009803_030 Hb_026144_030 Hb_026144_030 Hb_008111_010--Hb_026144_030 Hb_005054_280 Hb_005054_280 Hb_008111_010--Hb_005054_280 Hb_085010_010 Hb_085010_010 Hb_008111_010--Hb_085010_010 Hb_008111_010--Hb_005306_020 Hb_001143_140 Hb_001143_140 Hb_008111_010--Hb_001143_140 Hb_005306_020--Hb_001357_360 Hb_028872_100 Hb_028872_100 Hb_005306_020--Hb_028872_100 Hb_005306_020--Hb_000264_340 Hb_005306_020--Hb_000767_010 Hb_003212_010 Hb_003212_010 Hb_000264_340--Hb_003212_010 Hb_000264_340--Hb_005470_040 Hb_109489_010 Hb_109489_010 Hb_000264_340--Hb_109489_010 Hb_000264_340--Hb_123560_050 Hb_000597_080 Hb_000597_080 Hb_000264_340--Hb_000597_080 Hb_000685_040 Hb_000685_040 Hb_007320_020--Hb_000685_040 Hb_000059_080 Hb_000059_080 Hb_007320_020--Hb_000059_080 Hb_003767_010 Hb_003767_010 Hb_007320_020--Hb_003767_010 Hb_010812_140 Hb_010812_140 Hb_007320_020--Hb_010812_140 Hb_007320_020--Hb_000377_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.051167 6.47633 0.882727 2.87116 0.00935064 0.194091
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0212151 0.016693 0 4.3013 5.26487

CAGE analysis