Hb_001971_070

Information

Type -
Description -
Location Contig1971: 102725-105952
Sequence    

Annotation

kegg
ID egr:104434461
description multicopper oxidase LPR1-like
nr
ID CDO98374.1
description unnamed protein product [Coffea canephora]
swissprot
ID F4I4K5
description Multicopper oxidase LPR1 OS=Arabidopsis thaliana GN=LPR1 PE=2 SV=1
trembl
ID A0A068TQZ6
description Coffea canephora DH200=94 genomic scaffold, scaffold_2 OS=Coffea canephora GN=GSCOC_T00022445001 PE=4 SV=1
Gene Ontology
ID GO:0005507
description multicopper oxidase lpr1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001971_070 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_001901_010 0.0752390445 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
3 Hb_164162_020 0.0796435827 - - PREDICTED: uncharacterized protein LOC105646964 [Jatropha curcas]
4 Hb_004544_080 0.0936576957 - - lectin protein kinase [Populus trichocarpa]
5 Hb_003462_150 0.0948151878 - - PREDICTED: chitinase 1-like [Eucalyptus grandis]
6 Hb_006538_070 0.1011883628 - - hypothetical protein JCGZ_18339 [Jatropha curcas]
7 Hb_002999_090 0.1019246077 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000948_070 0.1059595666 - - hypothetical protein POPTR_0016s01720g [Populus trichocarpa]
9 Hb_000141_230 0.1068736973 - - PREDICTED: 14 kDa proline-rich protein DC2.15-like [Camelina sativa]
10 Hb_166813_010 0.1086049788 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
11 Hb_002475_020 0.1123696088 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 isoform X1 [Populus euphratica]
12 Hb_000608_080 0.113837999 - - hypothetical protein JCGZ_22216 [Jatropha curcas]
13 Hb_006153_200 0.1141979118 - - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Theobroma cacao]
14 Hb_000521_340 0.1170281722 - - PREDICTED: beta-glucosidase 13-like [Jatropha curcas]
15 Hb_031340_030 0.1340193719 - - PREDICTED: L-type lectin-domain containing receptor kinase IV.1 [Jatropha curcas]
16 Hb_002556_020 0.1341458728 - - hypothetical protein JCGZ_12588 [Jatropha curcas]
17 Hb_000175_480 0.1359832877 - - hypothetical protein JCGZ_06165 [Jatropha curcas]
18 Hb_005064_040 0.1372172432 - - hypothetical protein POPTR_0008s02680g [Populus trichocarpa]
19 Hb_001195_440 0.1377847664 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
20 Hb_007328_040 0.1403805891 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 isoform X2 [Nelumbo nucifera]

Gene co-expression network

sample Hb_001971_070 Hb_001971_070 Hb_001901_010 Hb_001901_010 Hb_001971_070--Hb_001901_010 Hb_164162_020 Hb_164162_020 Hb_001971_070--Hb_164162_020 Hb_004544_080 Hb_004544_080 Hb_001971_070--Hb_004544_080 Hb_003462_150 Hb_003462_150 Hb_001971_070--Hb_003462_150 Hb_006538_070 Hb_006538_070 Hb_001971_070--Hb_006538_070 Hb_002999_090 Hb_002999_090 Hb_001971_070--Hb_002999_090 Hb_001901_010--Hb_002999_090 Hb_001901_010--Hb_164162_020 Hb_006153_200 Hb_006153_200 Hb_001901_010--Hb_006153_200 Hb_001901_010--Hb_003462_150 Hb_001901_010--Hb_004544_080 Hb_164162_020--Hb_006538_070 Hb_000948_070 Hb_000948_070 Hb_164162_020--Hb_000948_070 Hb_166813_010 Hb_166813_010 Hb_164162_020--Hb_166813_010 Hb_006538_050 Hb_006538_050 Hb_164162_020--Hb_006538_050 Hb_004544_080--Hb_003462_150 Hb_000141_230 Hb_000141_230 Hb_004544_080--Hb_000141_230 Hb_000608_080 Hb_000608_080 Hb_004544_080--Hb_000608_080 Hb_004544_080--Hb_002999_090 Hb_002556_020 Hb_002556_020 Hb_004544_080--Hb_002556_020 Hb_002475_020 Hb_002475_020 Hb_004544_080--Hb_002475_020 Hb_003462_150--Hb_000141_230 Hb_003462_150--Hb_000608_080 Hb_003462_150--Hb_002999_090 Hb_003462_150--Hb_002556_020 Hb_003462_150--Hb_002475_020 Hb_006538_070--Hb_001901_010 Hb_006538_070--Hb_000948_070 Hb_006538_070--Hb_006538_050 Hb_000005_270 Hb_000005_270 Hb_006538_070--Hb_000005_270 Hb_002999_090--Hb_002556_020 Hb_002999_090--Hb_000141_230 Hb_002999_090--Hb_002475_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0113935 0.190295 0.00846407 0.276318 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.16161 0

CAGE analysis