Hb_001972_020

Information

Type -
Description -
Location Contig1972: 25840-30490
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID Q5RBK0
description Gypsy retrotransposon integrase-like protein 1 OS=Pongo abelii GN=GIN1 PE=2 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001972_020 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_001817_190 0.0001715049 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
3 Hb_010783_010 0.0002831124 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_004019_100 0.0007684837 - - PREDICTED: uncharacterized protein LOC105797448 [Gossypium raimondii]
5 Hb_001309_030 0.0009101998 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_000710_120 0.0011750305 - - hypothetical protein JCGZ_01844 [Jatropha curcas]
7 Hb_008976_010 0.0015793758 - - -
8 Hb_009188_010 0.0030418317 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
9 Hb_124540_020 0.0055948388 - - polyprotein [Citrus endogenous pararetrovirus]
10 Hb_011537_090 0.0066444551 - - hypothetical protein B456_009G071100 [Gossypium raimondii]
11 Hb_090778_010 0.0067749169 - - PREDICTED: uncharacterized protein LOC105764482 [Gossypium raimondii]
12 Hb_011616_060 0.0070052637 - - PREDICTED: uncharacterized protein LOC105789623 [Gossypium raimondii]
13 Hb_001662_020 0.0071050909 - - PREDICTED: F-box protein SKIP23-like isoform X3 [Eucalyptus grandis]
14 Hb_097889_010 0.0085408475 - - PREDICTED: uncharacterized protein LOC102584707 [Solanum tuberosum]
15 Hb_026532_010 0.0092520282 - - PREDICTED: uncharacterized protein LOC105772114 [Gossypium raimondii]
16 Hb_186440_010 0.0873929218 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
17 Hb_027890_010 0.1256010594 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
18 Hb_031691_010 0.1296862502 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_012330_030 0.1419778186 - - conserved hypothetical protein [Ricinus communis]
20 Hb_012404_010 0.1477240241 - - -

Gene co-expression network

sample Hb_001972_020 Hb_001972_020 Hb_001817_190 Hb_001817_190 Hb_001972_020--Hb_001817_190 Hb_010783_010 Hb_010783_010 Hb_001972_020--Hb_010783_010 Hb_004019_100 Hb_004019_100 Hb_001972_020--Hb_004019_100 Hb_001309_030 Hb_001309_030 Hb_001972_020--Hb_001309_030 Hb_000710_120 Hb_000710_120 Hb_001972_020--Hb_000710_120 Hb_008976_010 Hb_008976_010 Hb_001972_020--Hb_008976_010 Hb_001817_190--Hb_010783_010 Hb_001817_190--Hb_004019_100 Hb_001817_190--Hb_001309_030 Hb_001817_190--Hb_000710_120 Hb_001817_190--Hb_008976_010 Hb_010783_010--Hb_004019_100 Hb_010783_010--Hb_001309_030 Hb_010783_010--Hb_000710_120 Hb_010783_010--Hb_008976_010 Hb_004019_100--Hb_001309_030 Hb_004019_100--Hb_000710_120 Hb_004019_100--Hb_008976_010 Hb_001309_030--Hb_000710_120 Hb_001309_030--Hb_008976_010 Hb_000710_120--Hb_008976_010 Hb_009188_010 Hb_009188_010 Hb_008976_010--Hb_009188_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.00514918 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0196425

CAGE analysis